RetrogeneDB ID: | retro_dnov_867 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_11592:78454..78891(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATXN7L3 | ||
Ensembl ID: | ENSDNOG00000003379 | ||
Aliases: | None | ||
Description: | ataxin 7-like 3 [Source:HGNC Symbol;Acc:25416] |
Percent Identity: | 64.71 % |
Parental protein coverage: | 81.42 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 4 |
Parental | KDFEIVDQPGLDIFGQVFNQWKSKECV-CPNCSRSIAASRFAPHLEKCLGMGR-NSSRIANRRIANSNNM |
..FEI..Q.G..IF..V.NQ.K.K.CV..PNCS.SIAAS..APHLEKCL.M...NSSR......A.SN.M | |
Retrocopy | EEFEIMEQTGIFIFEKVLNQCK*K*CV<LPNCSHSIAASCSAPHLEKCLEMCG<NSSR--SLQVAKSNSM |
Parental | NKSESDQEDNDDINDNDWSYGS-EKKAKKR-KSDKNPNSPRRSKSLKHKNGELSNSDPFKYNNSTGISYE |
NKSESDQ.D.DDINDND.S..S.EKK.KKR.K...N.NS..RSKS.KHKN.E.SNSDPFK.NNSTG..Y. | |
Retrocopy | NKSESDQVDDDDINDNDCSCRS<EKKSKKR<KLVTNGNST*RSKS*KHKNWEFSNSDPFKHNNSTGMNYG |
Parental | TLGPEELRSLLTT |
TL.PE.L.SLLTT | |
Retrocopy | TLEPE*LCSLLTT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 6 .22 RPM |
SRP012922_cerebellum | 0 .00 RPM | 10 .59 RPM |
SRP012922_heart | 0 .00 RPM | 2 .32 RPM |
SRP012922_kidney | 0 .00 RPM | 2 .46 RPM |
SRP012922_liver | 0 .00 RPM | 3 .41 RPM |
SRP012922_lung | 0 .00 RPM | 5 .65 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 1 .21 RPM |
SRP012922_spleen | 0 .00 RPM | 4 .92 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000003379 | 13 retrocopies | |
Homo sapiens | ENSG00000087152 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000010959 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000006416 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000029935 | 1 retrocopy |