RetrogeneDB ID: retro_mmul_820

Retrocopy location

• Organism: Rhesus macaque (Macaca mulatta)
• Coordinates: 11:71558240..71558450(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMMUG00000029935
• Aliases: None
• Description: None

Sequence

>retro_mmul_820
ATGGAGGAAATTTCGTTGGCCAATCTGGATACTAACAAGCTAGAGGCCATCGCTCAGGAGATTTACGTAGACCTGATAGA
GGATTCTTGTTTGGGATTCTGCTTTGAGGTGCACCGGGCAGTCAAGTGCGGCTACTTCTACCTGGAGTTCGCAGAGACTG
GTAGCGTGAAGGATTTTGGCATTCAGCCAGTGGAAGACAAAGGAGCGTGC

Alignment

ORF - retro_mmul_820 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 72.86 %
• Parental protein coverage: 65.42 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MEEMSLSGLDNSKLEAIAQEIYADLVEDSCLGFCFEVHRAVKCGYFFLDDTDPDSMKDFGFQPVEEQGVC
          MEE.SL..LD..KLEAIAQEIY.DL.EDSCLGFCFEVHRAVKCGYF.L......S.KDFG.QPVE..G.C
Retrocopy MEEISLANLDTNKLEAIAQEIYVDLIEDSCLGFCFEVHRAVKCGYFYLEFAETGSVKDFGIQPVEDKGAC

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain	14.34 RPM	23.64 RPM
SRP007412_brain_prefrontal_cortex	21.02 RPM	27.05 RPM
SRP007412_cerebellum	11.62 RPM	11.17 RPM
SRP007412_heart	4.59 RPM	4.06 RPM
SRP007412_kidney	4.46 RPM	3.40 RPM
SRP007412_liver	1.62 RPM	2.85 RPM
SRP007412_testis	3.02 RPM	20.09 RPM

ChIP-Seq

Macaca mulatta was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmul_820 retrocopy.

TSS

Macaca mulatta was not studied using FANTOM5 data.

Lab

retro_mmul_820 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_mmul_820 has 0 orthologous retrocopies within eutheria group .

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 17 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000003379	13 retrocopies	retro_dnov_1026, retro_dnov_1144, retro_dnov_1211, retro_dnov_1590, retro_dnov_1902, retro_dnov_2325, retro_dnov_2448, retro_dnov_2497, retro_dnov_2600, retro_dnov_516, retro_dnov_86, retro_dnov_867, retro_dnov_961,
Homo sapiens	ENSG00000087152	1 retrocopy	retro_hsap_4847,
Gorilla gorilla	ENSGGOG00000010959	1 retrocopy	retro_ggor_3023,
Myotis lucifugus	ENSMLUG00000006416	1 retrocopy	retro_mluc_41,
Macaca mulatta	ENSMMUG00000029935	1 retrocopy	retro_mmul_820 ,