RetrogeneDB ID: | retro_dnov_261 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | GeneScaffold_31:17743..18009(-) | ||
Located in intron of: | ENSDNOG00000015661 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SNX24 | ||
Ensembl ID: | ENSDNOG00000019810 | ||
Aliases: | None | ||
Description: | sorting nexin 24 [Source:HGNC Symbol;Acc:21533] |
Percent Identity: | 68.82 % |
Parental protein coverage: | 50.28 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | LETYLQAVILENEELPKLFLDFL-NVRHLPS-LPKAESCGSFDETESEESSKLSHQPVLLFLRDP-YVLP |
L.T.LQ.VILENE.LPKLFLDFL.NV.HLPS.LPKA.SCGSFD.TESEE.SKL....V...L.DP...LP | |
Retrocopy | LGTHLQSVILENENLPKLFLDFL<NV*HLPS>LPKAKSCGSFDKTESEE*SKLPQAGVTV-LWDP<IILP |
Parental | TASDFPSVVIEGVLHGIFYSHLQ |
TAS..P.VV.EGVLHG..Y..LQ | |
Retrocopy | TASNLPNVVFEGVLHGVVYPRLQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 2 .14 RPM |
SRP012922_cerebellum | 0 .27 RPM | 8 .80 RPM |
SRP012922_heart | 0 .00 RPM | 11 .37 RPM |
SRP012922_kidney | 0 .00 RPM | 13 .14 RPM |
SRP012922_liver | 0 .15 RPM | 3 .87 RPM |
SRP012922_lung | 0 .15 RPM | 8 .55 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 18 .87 RPM |
SRP012922_spleen | 0 .46 RPM | 17 .97 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000031069 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000006859 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000019810 | 1 retrocopy |
retro_dnov_261 ,
|
Echinops telfairi | ENSETEG00000010310 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000001708 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000009392 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000013427 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000005170 | 2 retrocopies | |
Sorex araneus | ENSSARG00000009785 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000011329 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000014395 | 2 retrocopies |