RetrogeneDB ID: | retro_dnov_798 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_10888:94515..94774(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UQCRB | ||
Ensembl ID: | ENSDNOG00000017312 | ||
Aliases: | None | ||
Description: | ubiquinol-cytochrome c reductase binding protein [Source:HGNC Symbol;Acc:12582] |
Percent Identity: | 62.64 % |
Parental protein coverage: | 85.44 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | GQWLDSIQKQ-YHRVVEGREKGLMRDDTY-ENEDVKEAIKRLPENVYNDRMFRIKRALD-LTMKHQILPK |
G.WLD.I.K..Y.........GL..DD...E.E.VKEA..R.PENVYNDRMF.I.R.L..LTMKHQI.PK | |
Retrocopy | GEWLDDIRKD<YYNPSGFNKLGLIQDDIKTEHEAVKEAL-RFPENVYNDRMFCIRRTLS<LTMKHQIFPK |
Parental | EQWTKYEEDKFYLEPYLKEVI |
..W.K.EEDKFYLEPYLKEVI | |
Retrocopy | -VWMK*EEDKFYLEPYLKEVI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 50 .95 RPM |
SRP012922_cerebellum | 0 .00 RPM | 14 .30 RPM |
SRP012922_heart | 0 .00 RPM | 91 .19 RPM |
SRP012922_kidney | 0 .00 RPM | 31 .76 RPM |
SRP012922_liver | 0 .00 RPM | 24 .15 RPM |
SRP012922_lung | 0 .00 RPM | 17 .87 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 60 .58 RPM |
SRP012922_spleen | 0 .00 RPM | 17 .51 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000009449 | 4 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000017312 | 8 retrocopies |
retro_dnov_1109, retro_dnov_1163, retro_dnov_1706, retro_dnov_2410, retro_dnov_2518, retro_dnov_369, retro_dnov_608, retro_dnov_798 ,
|
Latimeria chalumnae | ENSLACG00000004465 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000007182 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000026670 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000008892 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000024967 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000008017 | 1 retrocopy | |
Drosophila melanogaster | FBgn0030733 | 1 retrocopy |