RetrogeneDB ID: | retro_dnov_927 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_122482:2762..3198(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RHOJ | ||
Ensembl ID: | ENSDNOG00000001761 | ||
Aliases: | None | ||
Description: | ras homolog family member J [Source:HGNC Symbol;Acc:688] |
Percent Identity: | 76.71 % |
Parental protein coverage: | 87.35 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MLKCVVVGD-GAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAGQEDYNQLRPLS |
MLKCVVVG..GAVGKTCLLMSYANDAFPEEYVPTVFDHYAV.VTVGGKQ.LLGLYDTAGQEDY..LRPLS | |
Retrocopy | MLKCVVVGN>GAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLS |
Parental | YPNTDVFLICFSVVNPASYHNVQEEWVPELKDCMPHVPYVLIGTQXXXXXXXXXXXRLLYMKEKPLTYEH |
YP.TDVFLICFSVVNPAS..NV.EEWVPELK...P.VP..LIGTQ...........RL..MKEKP...E. | |
Retrocopy | YPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQ |
Parental | GVKLAK |
G.KLAK | |
Retrocopy | GQKLAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 7 .58 RPM | 6 .42 RPM |
SRP012922_cerebellum | 4 .81 RPM | 0 .96 RPM |
SRP012922_heart | 21 .11 RPM | 3 .02 RPM |
SRP012922_kidney | 5 .20 RPM | 1 .37 RPM |
SRP012922_liver | 0 .93 RPM | 0 .46 RPM |
SRP012922_lung | 8 .40 RPM | 10 .08 RPM |
SRP012922_quadricep_muscle | 36 .87 RPM | 1 .73 RPM |
SRP012922_spleen | 13 .39 RPM | 4 .35 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000001761 | 2 retrocopies |
retro_dnov_192, retro_dnov_927 ,
|
Gorilla gorilla | ENSGGOG00000007948 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000006424 | 4 retrocopies | |
Vicugna pacos | ENSVPAG00000004859 | 2 retrocopies |