RetrogeneDB ID: | retro_vpac_574 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | scaffold_5031:80899..81313(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RHOJ | ||
Ensembl ID: | ENSVPAG00000004859 | ||
Aliases: | None | ||
Description: | ras homolog family member J [Source:HGNC Symbol;Acc:688] |
Percent Identity: | 58.74 % |
Parental protein coverage: | 90.2 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | TVTVRGKQHLLGLYDT-RQEDYNQLRPLSYPNTDVFLICFSVVNPASYHNIQEEWVPE-LKDCMPHVPYV |
.VT..GKQ.LLGL.DT.RQEDY..LRPLS.P.TDVFLICFSVVNPAS..N..EEWVPE.LK...PH.P.. | |
Retrocopy | SVTIGGKQYLLGLCDTVRQEDYDHLRPLSCPMTDVFLICFSVVNPASFQNVKEEWVPE>LKEYAPHAPFL |
Parental | LIGTQIDLRDDPKTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECS--ALTQKGLKAVFDE-AILTIFH |
LIGT.IDLRDDPKT.ARL..MKE.....E.G.K.AK.....C.L.C........G.....DE.A...I.. | |
Retrocopy | LIGT*IDLRDDPKTSARLNDMKEILTYVEQGQKPAK---ERCVLLCGMFSFNPEGIEDCSDE<AVGAILT |
Parental | PKK |
PKK | |
Retrocopy | PKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000001761 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000007948 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000006424 | 4 retrocopies | |
Vicugna pacos | ENSVPAG00000004859 | 2 retrocopies |
retro_vpac_574 , retro_vpac_588,
|
Vicugna pacos | ENSVPAG00000006919 | 3 retrocopies |