RetrogeneDB ID: | retro_dnov_989 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_131277:34..511(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAD23B | ||
Ensembl ID: | ENSDNOG00000001174 | ||
Aliases: | None | ||
Description: | RAD23 homolog B (S. cerevisiae) [Source:HGNC Symbol;Acc:9813] |
Percent Identity: | 80.49 % |
Parental protein coverage: | 51.27 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | ETPVATSPTSTDSTSGDSSRSNLFEDATSALVTG-QSYENMVTEIMSMGYEREQVIAALRASFNNPDRAV |
ETPVA..PT.TDSTSGDSS..NL.EDATS.LVTG.QSYE.MVTE.MS.GYER..VIAA.RASFNNPDRAV | |
Retrocopy | ETPVAACPT*TDSTSGDSSWPNLIEDATSTLVTG<QSYETMVTEFMSTGYERK*VIAAQRASFNNPDRAV |
Parental | EYLLMGIPGDRESQAVVDPPQAASTGAPQSS-AVAAAAATTTATTTTASSGGHPLEFLRNQPQFQQMRQI |
.YLLMGIPGDRESQAVVDPPQAASTGAPQS...VAA.A.T.TATT..AS.GGH.LE.L.NQP.FQQMRQI | |
Retrocopy | KYLLMGIPGDRESQAVVDPPQAASTGAPQSA<KVAAIATTMTATTAIASFGGHQLEVLQNQPPFQQMRQI |
Parental | I-QQNPSLLPALLQQIGRENPQLL |
..QQNPSLLPALL.QIGRENP.LL | |
Retrocopy | V<QQNPSLLPALL-QIGRENPRLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 79 .93 RPM |
SRP012922_cerebellum | 0 .00 RPM | 58 .42 RPM |
SRP012922_heart | 0 .00 RPM | 21 .35 RPM |
SRP012922_kidney | 0 .00 RPM | 22 .73 RPM |
SRP012922_liver | 0 .00 RPM | 37 .00 RPM |
SRP012922_lung | 0 .00 RPM | 38 .79 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 79 .79 RPM |
SRP012922_spleen | 0 .00 RPM | 41 .89 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000001926 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000016908 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000001174 | 2 retrocopies |
retro_dnov_1982, retro_dnov_989 ,
|
Equus caballus | ENSECAG00000021928 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000007533 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000007316 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000011925 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000005436 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000007597 | 1 retrocopy |