RetrogeneDB ID: | retro_ocun_1429 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 8:96309458..96310099(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000028152 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000007316 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 64.84 % |
Parental protein coverage: | 52.57 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | VTLKTLQQQTFK-IDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVV |
.TLK..QQQ.F..I...PEETV.ALKEK..SEKG.DAF.V.GQ.LI.A.K.L...TALKEYKIDE...VV | |
Retrocopy | ITLKAFQQQPFR<INTEPEETVRALKEKTQSEKGEDAFLVVGQQLI*ASKLLTNGTALKEYKIDEESTVV |
Parental | VMVTKPKAVTTPAPATTQQSNSATTTAVSSSTATAVTQASTPAPALAPTSTPASIAPAS-TTSSEPAPAS |
VMVTKP.AVT.P..ATTQ.SN.A.T.AVSSS.A..VTQA.TPA.A....S.PAS..PAS.T.SSEPAPA. | |
Retrocopy | VMVTKPRAVTAPSTATTQHSNPA-TMAVSSSPAPPVTQAPTPALAVTASSMPASMVPASMTASSEPAPAR |
Parental | ATKQEKPAEKPVETPVATSPTSTDSTSGDSS-RSNLFEDATSALVTGQSYENMVTEIMSMGYE-REQVIA |
AT..EKPAEK.V..P..T.P.S.DS..G..S.RSNL..DATS.LV.GQ.Y..MVTE.MSMGYE....V.. | |
Retrocopy | ATT*EKPAEKLVDMPAPTGPVSADSKPGNCS>RSNLLDDATSTLVSGQTYDKMVTE-MSMGYE<MRKVLV |
Parental | ALRASFNNP |
ALRASFNNP | |
Retrocopy | ALRASFNNP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 72 .46 RPM |
SRP017611_kidney | 0 .00 RPM | 88 .18 RPM |
SRP017611_liver | 0 .08 RPM | 68 .75 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000001926 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000016908 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000001174 | 2 retrocopies | |
Equus caballus | ENSECAG00000021928 | 1 retrocopy | |
Homo sapiens | ENSG00000119318 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000002511 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000007533 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000014944 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000017319 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000007316 | 1 retrocopy |
retro_ocun_1429 ,
|
Otolemur garnettii | ENSOGAG00000014216 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000019477 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000021229 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000011925 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000005436 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000007597 | 1 retrocopy |