RetrogeneDB ID: | retro_dord_106 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | GeneScaffold_3263:35603..36107(-) | ||
Located in intron of: | ENSDORG00000008709 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Fkbp3 | ||
Ensembl ID: | ENSDORG00000009462 | ||
Aliases: | None | ||
Description: | FK506 binding protein 3 [Source:MGI Symbol;Acc:MGI:1353460] |
Percent Identity: | 90. % |
Parental protein coverage: | 74.55 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | HLVTAYNHLFESKRF-KGTESISKVSEQVKNVKLNEDKPKETKSEETLDE-GPPK-YTKSILKKGDKTNF |
HLVTAYNHLFESK.F.K.T.SI.K.SEQVKNVKLNEDKPKETKSEETLDE.G..K.Y....LKKGDKTNF | |
Retrocopy | HLVTAYNHLFESKQF>KSTDSIRKISEQVKNVKLNEDKPKETKSEETLDE<GSTKIYKIYFLKKGDKTNF |
Parental | PKKGDVVHCWYTGTLQDGTVFDTNIQTSSKKKKSAKPLSFKVGVGKVIRGWDEALLTMSKGEKARLEIEP |
PKKGDVVHCWYTGTLQDGTVFD.NIQTSSKKKKSAK.LSFKVGVGKV.RGWDEALLTMSKGEKARLEIEP | |
Retrocopy | PKKGDVVHCWYTGTLQDGTVFDSNIQTSSKKKKSAKTLSFKVGVGKVTRGWDEALLTMSKGEKARLEIEP |
Parental | EWAYGKKGQPDAKIPPNAKLIFEVELVDID |
EWAYGKKGQPDAKIPPNAKLIFEVELVDID | |
Retrocopy | EWAYGKKGQPDAKIPPNAKLIFEVELVDID |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000014018 | 4 retrocopies | |
Dipodomys ordii | ENSDORG00000009462 | 1 retrocopy |
retro_dord_106 ,
|
Felis catus | ENSFCAG00000027304 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000003572 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000004962 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000007352 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000003012 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000006017 | 13 retrocopies | |
Tursiops truncatus | ENSTTRG00000006664 | 1 retrocopy |