RetrogeneDB ID:

retro_dord_106

Retrocopy
location
Organism:Kangaroo rat (Dipodomys ordii)
Coordinates:GeneScaffold_3263:35603..36107(-)
Located in intron of:ENSDORG00000008709
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:Fkbp3
Ensembl ID:ENSDORG00000009462
Aliases:None
Description:FK506 binding protein 3 [Source:MGI Symbol;Acc:MGI:1353460]


Retrocopy-Parental alignment summary:






>retro_dord_106
CATTTGGTTACAGCCTATAACCATCTCTTTGAAAGTAAGCAGTTTCAAAAGTACTGACAGTATACGTAAAATATCTGAGC
AAGTAAAAAATGTGAAGCTTAATGAAGATAAACCCAAAGAAACCAAGTCTGAAGAGACTCTGGATGAGGGTCCACCAAAA
TATACAAAATTTATTTTTTAAAAAAGGGGGATAAAACAAACTTTCCCAAAAAAGGAGATGTTGTTCACTGCTGGTATACA
GGAACACTACAGGATGGAACTGTTTTTGATTCTAATATTCAAACAAGTTCAAAGAAGAAGAAAAGTGCCAAGACTTTAAG
TTTTAAGGTTGGAGTAGGTAAAGTTACCAGAGGATGGGATGAAGCGCTTTTGACTATGAGTAAAGGAGAAAAGGCTCGAC
TGGAGATTGAACCAGAATGGGCTTATGGGAAGAAAGGACAGCCTGATGCCAAAATTCCACCAAATGCAAAACTTATTTTT
GAAGTGGAATTAGTGGACATCGAT

ORF - retro_dord_106 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 90. %
Parental protein coverage: 74.55 %
Number of stop codons detected: 0
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalHLVTAYNHLFESKRF-KGTESISKVSEQVKNVKLNEDKPKETKSEETLDE-GPPK-YTKSILKKGDKTNF
HLVTAYNHLFESK.F.K.T.SI.K.SEQVKNVKLNEDKPKETKSEETLDE.G..K.Y....LKKGDKTNF
RetrocopyHLVTAYNHLFESKQF>KSTDSIRKISEQVKNVKLNEDKPKETKSEETLDE<GSTKIYKIYFLKKGDKTNF
ParentalPKKGDVVHCWYTGTLQDGTVFDTNIQTSSKKKKSAKPLSFKVGVGKVIRGWDEALLTMSKGEKARLEIEP
PKKGDVVHCWYTGTLQDGTVFD.NIQTSSKKKKSAK.LSFKVGVGKV.RGWDEALLTMSKGEKARLEIEP
RetrocopyPKKGDVVHCWYTGTLQDGTVFDSNIQTSSKKKKSAKTLSFKVGVGKVTRGWDEALLTMSKGEKARLEIEP
ParentalEWAYGKKGQPDAKIPPNAKLIFEVELVDID
EWAYGKKGQPDAKIPPNAKLIFEVELVDID
RetrocopyEWAYGKKGQPDAKIPPNAKLIFEVELVDID

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Dipodomys ordii was not studied using RNA-Seq expression data.
Dipodomys ordii was not studied using ChIP-Seq data.
Dipodomys ordii was not studied using EST data.
Dipodomys ordii was not studied using FANTOM5 data.
retro_dord_106 was not experimentally validated.

Retrocopy orthology:
Dipodomys ordii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 9 parental genes, and 26 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000140184 retrocopies
Dipodomys ordii ENSDORG00000009462 1 retrocopy
retro_dord_106 ,
Felis catus ENSFCAG000000273041 retrocopy
Loxodonta africana ENSLAFG000000035722 retrocopies
Macropus eugenii ENSMEUG000000049621 retrocopy
Monodelphis domestica ENSMODG000000073521 retrocopy
Otolemur garnettii ENSOGAG000000030122 retrocopies
Tupaia belangeri ENSTBEG0000000601713 retrocopies
Tursiops truncatus ENSTTRG000000066641 retrocopy



Copyright © RetrogeneDB 2014-2017