RetrogeneDB ID: | retro_dord_293 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | scaffold_102597:440..986(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Mtfr1 | ||
Ensembl ID: | ENSDORG00000016322 | ||
Aliases: | None | ||
Description: | mitochondrial fission regulator 1 [Source:MGI Symbol;Acc:MGI:1914722] |
Percent Identity: | 89.56 % |
Parental protein coverage: | 54.65 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MLSWIKCLMRMVLQQVGISMQSVLWSGKPYGSSRSIVRKIGTNXXXXXXXXXXXXLTSHETEWSPKHPDE |
MLS.IKCLMRMVLQQVGISMQSVLWSGKPYGSS.SIVRKIGTN............LTSHET.WSPKHPDE | |
Retrocopy | MLS*IKCLMRMVLQQVGISMQSVLWSGKPYGSS*SIVRKIGTNLSLIQCPRVQFQLTSHETKWSPKHPDE |
Parental | DAVASFADVGWVATEEGECSTRLRTEVTSKPPHQDCLPYLEKSPSRQVSLPNLSQEDPPLKTAALANEEA |
DAVASFADVGWVATEEGECSTRLRTEVTSKPPHQDCLPYLEKSPSRQ.SLPNLSQED.PLKTAALANEEA | |
Retrocopy | DAVASFADVGWVATEEGECSTRLRTEVTSKPPHQDCLPYLEKSPSRQISLPNLSQEDLPLKTAALANEEA |
Parental | LQKISALENELAALRAQIAKIVTLQEQQNLVTGDLDSTTSST |
LQKISALENELAALRAQIAKIVTLQEQQNLVTGDL.STTS.T | |
Retrocopy | LQKISALENELAALRAQIAKIVTLQEQQNLVTGDLESTTSVT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000012281 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000006664 | 3 retrocopies | |
Dipodomys ordii | ENSDORG00000016322 | 1 retrocopy |
retro_dord_293 ,
|
Homo sapiens | ENSG00000066855 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000011263 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000009909 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000008165 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000018631 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000021359 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000010102 | 1 retrocopy |