RetrogeneDB ID: | retro_mmul_2590 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | X:64998362..64999022(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MTFR1 | ||
Ensembl ID: | ENSMMUG00000011263 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 68.89 % |
Parental protein coverage: | 71.7 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 2 |
Parental | HATEWSPSHPGEDAVASFADVGWVAKEEGECSARLRTEVRSRPPLQDDLLFFEKAPSRQISLPDLSQEEP |
HATE..P.HPGE.AV.SF..V.WVAK..GECS.R.RTE.RSRP...DDL.FF..APSRQISLPDLSQEEP | |
Retrocopy | HATESGPNHPGEEAVVSFVAVEWVAK--GECSTRPRTEARSRPSFHDDL-FFKEAPSRQISLPDLSQEEP |
Parental | QLKTPA-LANEEALQKICALENELAALRAQIAKIVTQQEQQNLIAGDLDSTTSGTTLPPPPPPPPPPPPP |
QLKTPA.L.NEEALQKICALENELAALRAQI.KIVTQQ.Q.NLI..DLD.TTS.TT.P.PPP..P...P. | |
Retrocopy | QLKTPA<LVNEEALQKICALENELAALRAQITKIVTQQ*QENLIESDLDFTTSVTTPPSPPPLLPL*LPS |
Parental | PLGLHQSVSAIDLIKERREKRANAGKTLVKNN-PKKPEMPNMLEILKDMNSVKLRSVKRSEQDVKPKPVD |
PLGLHQS....DLI.....K.ANAGKTL.KNN......M...L.ILKDM.SV.L.SVK.SEQDV.PK.VD | |
Retrocopy | PLGLHQSIFDTDLIRG*GWKKANAGKTLAKNN>XXXADMAKKLGILKDMISVEL*SVKTSEQDV*PKSVD |
Parental | ATDPAALIAEALKRK |
A..P...IA.ALK.K | |
Retrocopy | AAGPGPVIADALKKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 3 .47 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 1 .51 RPM |
SRP007412_cerebellum | 0 .00 RPM | 8 .46 RPM |
SRP007412_heart | 0 .00 RPM | 6 .24 RPM |
SRP007412_kidney | 0 .00 RPM | 26 .17 RPM |
SRP007412_liver | 0 .00 RPM | 13 .10 RPM |
SRP007412_testis | 0 .00 RPM | 130 .95 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4849 |
Pongo abelii | retro_pabe_3769 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000012281 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000006664 | 3 retrocopies | |
Dipodomys ordii | ENSDORG00000016322 | 1 retrocopy | |
Homo sapiens | ENSG00000066855 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000011263 | 1 retrocopy |
retro_mmul_2590 ,
|
Mustela putorius furo | ENSMPUG00000009909 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000008165 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000018631 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000021359 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000010102 | 1 retrocopy |