RetrogeneDB ID: | retro_dord_412 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | scaffold_172521:211..567(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Mrps10 | ||
Ensembl ID: | ENSDORG00000002081 | ||
Aliases: | None | ||
Description: | mitochondrial ribosomal protein S10 [Source:MGI Symbol;Acc:MGI:1928139] |
Percent Identity: | 84.17 % |
Parental protein coverage: | 63.98 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | YKRLSILVKGHDKAVL-DSYEYFAVLAAKELGISIKVHEPPRKIERFTLLKSVHIFKKHRVQYEMRTLYR |
Y...SILVKGHDK.VL.DSYEYFAVLAAK.LGISIKVHEPPRK.E.FTLLKSVH.FK.HRVQYEMR.LY. | |
Retrocopy | YINTSILVKGHDKDVL<DSYEYFAVLAAKKLGISIKVHEPPRKTE*FTLLKSVHVFKTHRVQYEMRILYG |
Parental | CLELKHLTGCTANVYLEYIQRNLPEGVAMEVTKTHLEQLLEHIKKPIWET |
CLEL..LTGCTA.VYLEYIQ.NLPEGVAMEVTKT.LEQL.EHIKKPI.ET | |
Retrocopy | CLEL*QLTGCTADVYLEYIQ*NLPEGVAMEVTKTQLEQLPEHIKKPI*ET |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dipodomys ordii | ENSDORG00000002081 | 1 retrocopy |
retro_dord_412 ,
|
Homo sapiens | ENSG00000048544 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000012808 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000011379 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000014661 | 1 retrocopy | |
Mus musculus | ENSMUSG00000034729 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000004800 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000016697 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000016613 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000018169 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000022609 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000027016 | 1 retrocopy |