RetrogeneDB ID: | retro_itri_1183 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393395.1:5118073..5118442(+) | ||
Located in intron of: | ENSSTOG00000029077 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRPS10 | ||
Ensembl ID: | ENSSTOG00000027016 | ||
Aliases: | None | ||
Description: | mitochondrial ribosomal protein S10 [Source:HGNC Symbol;Acc:14502] |
Percent Identity: | 67.97 % |
Parental protein coverage: | 62.69 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MKWVQFSNLHIDV-PKDLTKPTITISDEPDTLYKRLSILVKGHDK-AVLDSYEYFAVLAAKELGISIKVH |
MKW.QFSN.H.DV.PK......ITISDE.DTLY..LSIL.KGH.K.AV..SYEYFA.LA.KEL..S.KVH | |
Retrocopy | MKWAQFSNPHTDV<PKGFDQ-MITISDEMDTLYECLSILLKGHKK>AVMNSYEYFAMLAVKELDLSTKVH |
Parental | EPPRKIERFTLLKSVHIFKKHRVQYEMRTLYRCLELEHLTGCTADVYLEYIQRNLPEG |
EPPR....F.......IF...RVQYEMR.L.RCLELEHLTGCTADVYLEY.Q.NLPEG | |
Retrocopy | EPPRNTMIF--FSNQCIFSRSRVQYEMRMLCRCLELEHLTGCTADVYLEYSQQNLPEG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dipodomys ordii | ENSDORG00000002081 | 1 retrocopy | |
Homo sapiens | ENSG00000048544 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000012808 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000011379 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000014661 | 1 retrocopy | |
Mus musculus | ENSMUSG00000034729 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000004800 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000016697 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000016613 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000018169 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000022609 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000027016 | 1 retrocopy |
retro_itri_1183 ,
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