RetrogeneDB ID: | retro_dord_443 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | scaffold_18951:7551..7917(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Synj2bp | ||
Ensembl ID: | ENSDORG00000010450 | ||
Aliases: | None | ||
Description: | synaptojanin 2 binding protein [Source:MGI Symbol;Acc:MGI:1344347] |
Percent Identity: | 72.36 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | LGFNIVGGTDQQYVSNDSGIYVSRIKENGAAAQDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAV |
L..NIVGGTDQQYVSNDS.IY...IKEN.AAA.D..LQEGDKILSV.GQ.LKNLLHQDAVDL..NA.YAV | |
Retrocopy | LRLNIVGGTDQQYVSNDSSIYIF*IKENEAAARDVPLQEGDKILSVHGQALKNLLHQDAVDLLNNANYAV |
Parental | SLRVQHRLQVQNGPIGHRGEGEPNSIPVAVMLLPVFALTMLAAWAFMKYRQQL |
S.RVQH....QN...G...EGEPNSIPVAVMLLP.....M.AAWAFMK..QQL | |
Retrocopy | SQRVQH**KLQNRLLGCQDEGEPNSIPVAVMLLPLCS-PMVAAWAFMKCQQQL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000007586 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000010450 | 1 retrocopy |
retro_dord_443 ,
|
Macaca mulatta | ENSMMUG00000011086 | 1 retrocopy | |
Mus musculus | ENSMUSG00000090935 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000013211 | 1 retrocopy |