RetrogeneDB ID: | retro_dord_611 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | scaffold_40474:4..401(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BC026590 | ||
Ensembl ID: | ENSDORG00000008618 | ||
Aliases: | None | ||
Description: | cDNA sequence BC026590 [Source:MGI Symbol;Acc:MGI:2677850] |
Percent Identity: | 64.23 % |
Parental protein coverage: | 73.48 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 4 |
Parental | CVITLAASHPVLQSGKTIQSISYQISTNCSRLQNKVSG-KFKRGAQFLTELAPLCKIYCSDGE-EYTISS |
CV..LAASHPVLQS.K..QSISY..ST..SRLQ.K.SG.KF..G.Q.L...A.LCKI.C.D.E....I.. | |
Retrocopy | CVLSLAASHPVLQSRKESQSISY*SSTKYSRLQKKFSG<KFM*GTQLLRKFALLCKICC*DKE>KA*IAM |
Parental | CIRGRLMEVNENILHK-PSILQ-EKPSTEGYIAVVLPKFEESKSITEGLLTQKQYDEIVGKRMDATT |
..RG.LMEVN.NILH..PSIL..EK.STEGYIAV.LPKFEE.KSITEGLLTQKQ......K...ATT | |
Retrocopy | FARGWLMEVNRNILHY<PSILE<EKLSTEGYIAVMLPKFEECKSITEGLLTQKQHKQFIVK*INATT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000004996 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000028510 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000005927 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000008618 | 1 retrocopy |
retro_dord_611 ,
|
Homo sapiens | ENSG00000119328 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000013637 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000002074 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000012563 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000001882 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000024317 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000019483 | 1 retrocopy | |
Sorex araneus | ENSSARG00000009305 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000027231 | 1 retrocopy |