RetrogeneDB ID: | retro_ogar_1200 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873539.1:1790075..1790377(+) | ||
Located in intron of: | ENSOGAG00000028272 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FAM206A | ||
Ensembl ID: | ENSOGAG00000024317 | ||
Aliases: | None | ||
Description: | family with sequence similarity 206, member A [Source:HGNC Symbol;Acc:1364] |
Percent Identity: | 70.75 % |
Parental protein coverage: | 55.85 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | ICVITLAGSHPVLQSGKTIKSISYQISNNCSRLQNKV-SGKFKRGAQFLTELAPLCKIYCSDGEEYTVSS |
.CVITLAGS.PVLQSGKTIKS.S.QIS.N.SR.QNKV..G....G..F...L..LCKIYC.D....T.SS | |
Retrocopy | VCVITLAGSYPVLQSGKTIKSTSHQISINGSRHQNKV<LGNLSGGHSF*-QLVALCKIYCTDT---TLSS |
Parental | CVRGRLMEVNENILHKPSILQEKPSTEGYIAVVLPK |
CVRGRLM.VNENILHKP.ILQEK.STEGYI..VLPK | |
Retrocopy | CVRGRLMDVNENILHKPFILQEKLSTEGYITAVLPK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000004996 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000028510 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000005927 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000008618 | 1 retrocopy | |
Homo sapiens | ENSG00000119328 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000013637 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000002074 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000012563 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000001882 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000024317 | 1 retrocopy |
retro_ogar_1200 ,
|
Pongo abelii | ENSPPYG00000019483 | 1 retrocopy | |
Sorex araneus | ENSSARG00000009305 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000027231 | 1 retrocopy |