RetrogeneDB ID: | retro_dord_632 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | scaffold_44209:8643..8985(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Prps1l1 | ||
Ensembl ID: | ENSDORG00000014534 | ||
Aliases: | None | ||
Description: | phosphoribosyl pyrophosphate synthetase 1-like 1 [Source:MGI Symbol;Acc:MGI:1922706] |
Percent Identity: | 68.97 % |
Parental protein coverage: | 54.81 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | IPVDNLYAEPAVLKWIRENISEWRNCTIVSPDAGGAKRVTSIADRLNVDFALI-HKERKKANEVDRMVLV |
IP.DNLY.EP.VLK.IRENISEW.N.TIVS...G.AKRVT.IAD.LNVD.ALI..K..KK.NEVD.MVL. | |
Retrocopy | IPLDNLYTEPDVLK*IRENISEWKNYTIVSLVIGRAKRVTAIADQLNVDVALI>YKLWKKVNEVDCMVLM |
Parental | GDVKDRVAILVDDMADTCGTICHAADKLLS-AGATRVYAILTHGIF |
G.VKD.VAI.VDDM.D..GTICHAA.KLLS..G.T.V..ILT...F | |
Retrocopy | GNVKD*VAIFVDDMTDAYGTICHAANKLLS<TGVTKVFTILTRDLF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000002028 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000007577 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000014534 | 2 retrocopies |
retro_dord_356, retro_dord_632 ,
|
Macropus eugenii | ENSMEUG00000010071 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000012391 | 3 retrocopies | |
Ochotona princeps | ENSOPRG00000013140 | 1 retrocopy |