RetrogeneDB ID: | retro_dord_760 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | scaffold_79719:4003..4447(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ube2d4 | ||
Ensembl ID: | ENSDORG00000006888 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2D 4 [Source:MGI Symbol;Acc:MGI:3644823] |
Percent Identity: | 87.84 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MALKRIQKELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNESPYQGGVFFLTIHFPTDYPFKPPKVAFT |
MALKRI.KEL..L.RDPPAQCSAGPVGDD.FHWQATIMGPN.SPYQGGVFFLTI.FPTD.PFKPPKVAFT | |
Retrocopy | MALKRIHKELN*LTRDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIQFPTDFPFKPPKVAFT |
Parental | TKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPEIAHTYKADRE-KYNRLAR |
T.IYHPNINSNGSICLDIL.SQWSPALT.SKVL.SICSLLCDPNPDDP.VPEIA..YK.DRE.KYNR.AR | |
Retrocopy | TRIYHPNINSNGSICLDILQSQWSPALTISKVLSSICSLLCDPNPDDPSVPEIAPIYKTDRESKYNRIAR |
Parental | EWTQKYAM |
EWTQKYAM | |
Retrocopy | EWTQKYAM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000003997 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000007875 | 4 retrocopies | |
Dipodomys ordii | ENSDORG00000006762 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000006888 | 5 retrocopies | |
Dipodomys ordii | ENSDORG00000011406 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000015441 | 1 retrocopy | |
Homo sapiens | ENSG00000078967 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000003378 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000011919 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000002410 | 5 retrocopies | |
Nomascus leucogenys | ENSNLEG00000003364 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000008900 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000029727 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000016722 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000003691 | 9 retrocopies | |
Tarsius syrichta | ENSTSYG00000000595 | 14 retrocopies |