RetrogeneDB ID: | retro_tbel_2782 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_119040:37860..38233(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSTBEG00000006915 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2D4 | ||
Ensembl ID: | ENSTBEG00000003691 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2D 4 (putative) [Source:HGNC Symbol;Acc:21647] |
Percent Identity: | 79.2 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | ELADLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNI |
.L.DLQRDP...CSAGPVGDDLFHWQATIMGP.DS.YQGGV.F.T.HFPTDYPFKPPK.AFTTKIYHPNI | |
Retrocopy | KLSDLQRDPSVHCSAGPVGDDLFHWQATIMGPPDSTYQGGVLFFTVHFPTDYPFKPPKIAFTTKIYHPNI |
Parental | NTNGSICLDILRSQWSPALTVS-KVLLSVCSLLCDPNPEDPLVPEIAHTYKADRE |
N..GSICLDIL.S.WSPALTVS.KVL.SVCSLLC..NP.D.LVP.IA..YK.D.E | |
Retrocopy | NSDGSICLDILKSLWSPALTVS>KVLFSVCSLLCNSNPDDLLVPDIAQIYKSDKE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000003997 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000007875 | 4 retrocopies | |
Dipodomys ordii | ENSDORG00000006888 | 5 retrocopies | |
Homo sapiens | ENSG00000078967 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000003378 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000011919 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000002410 | 5 retrocopies | |
Nomascus leucogenys | ENSNLEG00000003364 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000008900 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000029727 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000016722 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000000270 | 5 retrocopies | |
Tupaia belangeri | ENSTBEG00000003691 | 9 retrocopies |
retro_tbel_1273, retro_tbel_2535, retro_tbel_2782 , retro_tbel_307, retro_tbel_367, retro_tbel_37, retro_tbel_4118, retro_tbel_4163, retro_tbel_4312,
|
Tupaia belangeri | ENSTBEG00000009932 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000000595 | 14 retrocopies |