RetrogeneDB ID:

retro_drer_25

Retrocopy
location
Organism:Zebrafish (Danio rerio)
Coordinates:19:48956041..48956249(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:CABZ01062563.1
Ensembl ID:ENSDARG00000086035
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_drer_25
TCCATCCATCCATCTCCATATCTCTATCTTTCCATAAAATCATCCGCCCATCTGTCCTTGCATCCATCATTTATCCATCT
ATATATATATCCTTGCATCCTTCCATCAATCTAGCCTTGCATCCACCCATTTAAACCATCCTTGCATCCACCCATCCATC
CATCCTAGCACTTATGCATCCACCTTTGTATCAATCCATCCATCTATG

ORF - retro_drer_25 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 52.78 %
Parental protein coverage: 68.63 %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalSIHPSIHPSIHPSIHPSIHAILLPS-VCLLFHPSIHPSIHPSIHPSI-HPFIHPSIYPSIPHFVYCSIHP
SIHPS..P....SI..S.H..L.PS...L...P.I.PSI.P.IHP...HP.IHPSI.PS.......SIHP
RetrocopySIHPS--PYLYLSIKSSAHLSLHPSFIHLYIYPCILPSI*PCIHPFK>HPCIHPSIHPSTYASTFVSIHP
ParentalSM
SM
RetrocopySM

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Danio rerio was not studied using RNA-Seq expression data.
Danio rerio was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_drer_25 retrocopy.
Danio rerio was not studied using FANTOM5 data.
retro_drer_25 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_drer_25 has 0 orthologous retrocopies within teleost group .


Parental genes homology:
Parental genes homology involve 3 parental genes, and 5 retrocopies.

Species Parental gene accession Retrocopies number
Danio rerio ENSDARG00000086035 3 retrocopies
retro_drer_25 , retro_drer_34, retro_drer_37,
Danio rerio ENSDARG000000903901 retrocopy
Ficedula albicollis ENSFALG000000137531 retrocopy



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