>retro_ecab_1003
ATAAATGATTCAGGTGGGAGAGAACCAAGATTTTTAAAAAATGGAGAAATTCGAGGAGAAATATCCAATTCAATGAGGAA
AAGCAACATAAGGATAATGGGTATCCCAGAAGGAGAAGAGAGGGAAAAAGACCAGAGAGTTTATTTCAAGAAATAATAGC
TGAAAACTTCCAAACATGAAGAAAGAACTTAGTATAGGAGTATATGAAGCTAACAGAACACCTAACTATCTCAATGCAAA
AAGACCTTTTCCAAGGCACATTATATTAAAAATATCAAAAGTTAATGACAAAGAAAAAATATTAAAGAGAGAAGAAAATA
ACTTACAAAGGAACCCCCATCAGGATATCAGCAGATTTCTCAGCAGAAACTCTCCATACTATGAGACAGTGGAATGGTAT
ACTCAAAATATTGAAAGATAAAAACTGTCAG
ORF - retro_ecab_1003 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
58.67 % |
Parental protein coverage: |
83.05 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
3 |
Retrocopy - Parental Gene Alignment:
Parental | IQSEENKEKRMKKIKDSLLEKYLTIRKSNIRIIGIPEGEEKQKDT-ESLFKEIIAENF-PNLGKKLDLQV |
| I......E.R..K......E.....RKSNIRI.GIPEGEE..KD..ESLF.EIIAENF.PN..K.L...V |
Retrocopy | INDSGGREPRFLKNGEIRGEISNSMRKSNIRIMGIPEGEEREKDQ<ESLFQEIIAENF<PNMKKELSIGV |
|
Parental | HEANRTPNYIKAKRPSPRHIVLKLVKVNDKEKILRAERQKKINYKRTP-IRLSADFSAETLHTKKEWNDT |
| .EANRTPNY..AKRP.PRHI.LK..KVNDKEKIL..E.....N..R.P.IR.SADFSAETLHT...WN.. |
Retrocopy | YEANRTPNYLNAKRPFPRHIILKISKVNDKEKILKREEN---NLQRNP>IRISADFSAETLHTMRQWNGI |
|
Parental | FETLRDKNFQ |
| ...L.DKN.Q |
Retrocopy | LKILKDKNCQ |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP021940_articular_cartilage |
0 .00 RPM |
0 .00 RPM |
SRP021940_cerebellum |
0 .00 RPM |
0 .00 RPM |
SRP021940_embryo |
0 .00 RPM |
0 .00 RPM |
SRP021940_placental_villous |
0 .00 RPM |
0 .00 RPM |
SRP021940_synovial_membrane |
0 .00 RPM |
0 .00 RPM |
SRP021940_testis |
0 .00 RPM |
0 .00 RPM |
Equus caballus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ecab_1003 retrocopy.
Equus caballus was not studied using FANTOM5 data.
retro_ecab_1003 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ecab_1003 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
1 parental gene, and
11 retrocopies.
Species |
Parental gene accession |
Retrocopies number |
|
Equus caballus | ENSECAG00000012904 | 11 retrocopies |
retro_ecab_1003 , retro_ecab_1068, retro_ecab_1117, retro_ecab_155, retro_ecab_407, retro_ecab_695, retro_ecab_702, retro_ecab_768, retro_ecab_856, retro_ecab_877, retro_ecab_906,
|