RetrogeneDB ID: | retro_ecab_1076 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | X:61525033..61525555(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000018840 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 52.22 % |
Parental protein coverage: | 88.44 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 4 |
Parental | RSEDIFQEIYNPIRKRNIRIISIPTGEE-RQNRRESLFKEIITENFLNLGKGLEIQVKEANRTPNYINVE |
.SE.I...I...IR.....IIS.P..EE.R....ESLFKEII.ENFLNL.KGL.IQV.EANRT..Y.N.. | |
Retrocopy | KSEEIL*YIAGLIRRKK*-IISVPDREE>RRKGAESLFKEIIAENFLNLEKGLDIQVSEANRTHFYLNAK |
Parental | RPSPRHILVKLAKLVMKEYIMAEAARQKKITYKGSPIRLSADFS-QTVQTRREWNDIIKILKYKNYPPRI |
RPSPRH...KL.K...KE....EA.....ITYKG..I.LS.DF..Q...........IK.LK..NY.P.I | |
Retrocopy | RPSPRHSIRKL*KINDKERLLEEAGGWGGITYKGTSIKLSVDFL>QKLYIYEKMECYIKVLKDENYQP*I |
Parental | LYPVKLSFRYGREIKAFQ-DKQKLREFITTRPP-LQEMMK |
L...KLSF........FQ.DKQKL.EF..TRPP.L.EM.K | |
Retrocopy | LDLTKLSF-INEK*RLFQ<DKQKLTEFTITRPP<LKEMLK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 0 .00 RPM |
SRP021940_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP021940_embryo | 0 .00 RPM | 0 .03 RPM |
SRP021940_placental_villous | 0 .00 RPM | 0 .00 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 0 .00 RPM |
SRP021940_testis | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Equus caballus | ENSECAG00000018840 | 28 retrocopies |
retro_ecab_1000, retro_ecab_1011, retro_ecab_1045, retro_ecab_1062, retro_ecab_1076 , retro_ecab_221, retro_ecab_243, retro_ecab_296, retro_ecab_322, retro_ecab_327, retro_ecab_424, retro_ecab_482, retro_ecab_498, retro_ecab_523, retro_ecab_545, retro_ecab_564, retro_ecab_571, retro_ecab_663, retro_ecab_718, retro_ecab_742, retro_ecab_763, retro_ecab_787, retro_ecab_790, retro_ecab_824, retro_ecab_902, retro_ecab_908, retro_ecab_928, retro_ecab_929,
|