RetrogeneDB ID: | retro_ecab_243 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 10:53847962..53848537(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000018840 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 60.8 % |
Parental protein coverage: | 98.49 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | LEDRNTEMLKMEEERELRLKRSEDIFQEIYNPIRKRNIRIISIPTGEERQNRR-ESLFKEIITENFLNLG |
L.DRN..ML..E.ER.LR....E.I.QEI...IRK.NI..I.IP.G.....RR.ESLFKEI...NF.NLG | |
Retrocopy | LKDRN--MLHVEKERKLRFXXXEEILQEISDSIRKSNISVIDIPEGQDEE-RR>ESLFKEIMA*NFPNLG |
Parental | KGLEIQVKEANRTPNYINVERPSPRHIL-VKLAKLVMKEYIMAEAARQKKITYKGSPIRLSADFSQTVQT |
K.L.IQV.EAN.TPNY.N..RPSPRHI...K..K......I...AARQ.KI..KG.PIR.S..F...... | |
Retrocopy | KKLDIQVREANSTPNYFNTKRPSPRHII<IKIVKSQ*QIKILG-AARQMKIS*KGIPIRPSTGFTSETLQ |
Parental | RR-EWNDIIKILKYKNYPPRILYPVKLSFRYGREIKAFQDKQKLREFITTRPPLQEMMK |
...EWNDI.KILK.K.Y.P.ILYPVKL.FRY.REIKAF.DKQKL.EFITTRP.LQEMMK | |
Retrocopy | GK<EWNDIFKILKDKKYQPSILYPVKLFFRYDREIKAFPDKQKLKEFITTRPALQEMMK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 0 .00 RPM |
SRP021940_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP021940_embryo | 0 .00 RPM | 0 .03 RPM |
SRP021940_placental_villous | 0 .00 RPM | 0 .00 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 0 .00 RPM |
SRP021940_testis | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Equus caballus | ENSECAG00000018840 | 28 retrocopies |
retro_ecab_1000, retro_ecab_1011, retro_ecab_1045, retro_ecab_1062, retro_ecab_1076, retro_ecab_221, retro_ecab_243 , retro_ecab_296, retro_ecab_322, retro_ecab_327, retro_ecab_424, retro_ecab_482, retro_ecab_498, retro_ecab_523, retro_ecab_545, retro_ecab_564, retro_ecab_571, retro_ecab_663, retro_ecab_718, retro_ecab_742, retro_ecab_763, retro_ecab_787, retro_ecab_790, retro_ecab_824, retro_ecab_902, retro_ecab_908, retro_ecab_928, retro_ecab_929,
|