RetrogeneDB ID: | retro_ecab_213 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 10:21966444..21967212(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSECAG00000003274 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000016162 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 96.48 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MATQRKHLVKDFNPYITCYICKGYLIKPTTVTECLHTFCKTCIVQHFEDSNDCPRCGNQLMTTPFFQLLR |
MATQRKHLVKDFNPYITCYICKGYLIKPTTVTECLHTFCKTCIVQHFEDSNDCPRCGNQ...T.....LR | |
Retrocopy | MATQRKHLVKDFNPYITCYICKGYLIKPTTVTECLHTFCKTCIVQHFEDSNDCPRCGNQVHETNPLEMLR |
Parental | LDNTLEEIIFKLVPGLREQELERESEFWKKNKPQENGQDDTSKVDRPKVDEEGDENQDDKDYHRSDPQIA |
LDNTLEEIIFKLVPGLREQELERESEFWKKNKP.ENGQDDTSKVDRPKVDEEGDENQDDKDYHRSDPQIA | |
Retrocopy | LDNTLEEIIFKLVPGLREQELERESEFWKKNKPRENGQDDTSKVDRPKVDEEGDENQDDKDYHRSDPQIA |
Parental | ICLDCLRNNGQSGDNVVKGLMKKFIRCSTRVTVGTIKKFLSLKLKLPSSYELDVLCNGEIMGKDHTMEFI |
ICLDCLRNNGQSGDNVVKGLMKKFIRCSTRVTVGTIKKFLSLKLKLPSSYELDVLCNGEIMGKDHTMEFI | |
Retrocopy | ICLDCLRNNGQSGDNVVKGLMKKFIRCSTRVTVGTIKKFLSLKLKLPSSYELDVLCNGEIMGKDHTMEFI |
Parental | YMTRWRLRGENFRCLNCSASQVCSQDGPLYQSYPMVLQYRPRIDFG |
YMTRWRLRGENFRCLNCSASQVCSQDGPLYQSYPMVLQYRPRIDFG | |
Retrocopy | YMTRWRLRGENFRCLNCSASQVCSQDGPLYQSYPMVLQYRPRIDFG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .30 RPM | 4 .60 RPM |
SRP021940_cerebellum | 0 .05 RPM | 0 .57 RPM |
SRP021940_embryo | 0 .08 RPM | 1 .53 RPM |
SRP021940_placental_villous | 0 .10 RPM | 4 .14 RPM |
SRP021940_synovial_membrane | 0 .05 RPM | 1 .35 RPM |
SRP021940_testis | 0 .70 RPM | 10 .04 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000011001 | 1 retrocopy | |
Equus caballus | ENSECAG00000016162 | 1 retrocopy |
retro_ecab_213 ,
|
Microcebus murinus | ENSMICG00000012035 | 5 retrocopies | |
Procavia capensis | ENSPCAG00000007871 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000009179 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000014814 | 1 retrocopy |