RetrogeneDB ID: | retro_itri_1546 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393536.1:2238911..2239254(-) | ||
Located in intron of: | ENSSTOG00000013781 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PCGF5 | ||
Ensembl ID: | ENSSTOG00000009179 | ||
Aliases: | None | ||
Description: | polycomb group ring finger 5 [Source:HGNC Symbol;Acc:28264] |
Percent Identity: | 82.05 % |
Parental protein coverage: | 60.85 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | CLDCLRNNGQSGDNVVKGLMKKFIRCSTRVTVGTIK-KF-LSLKLKLPSSYELDVLCNGEIMGKDHTMEF |
CLDCL.NNGQSG.NVVK..MKKFI.CST.VTVGT.K.KF.LSLKLKLPSSYEL...CNGEIM.KD.TMEF | |
Retrocopy | CLDCL*NNGQSGYNVVKAPMKKFIQCSTCVTVGTTK<KF<LSLKLKLPSSYELHMQCNGEIMEKDNTMEF |
Parental | IYMTRWRLRGENFRCLNCSASQVCSQDGPLYQSYPMVLQYRPRIDFG |
IYM.R..LRGENFRCLNCSASQVCSQDGP.YQSYP.VLQ..PRIDFG | |
Retrocopy | IYMIRR*LRGENFRCLNCSASQVCSQDGPQYQSYPTVLQFQPRIDFG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Equus caballus | ENSECAG00000016162 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000009179 | 1 retrocopy |
retro_itri_1546 ,
|
Tursiops truncatus | ENSTTRG00000014814 | 1 retrocopy |