RetrogeneDB ID: | retro_ecab_400 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 17:60137129..60137819(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSECAG00000003783 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UCHL3 | ||
Ensembl ID: | ENSECAG00000024190 | ||
Aliases: | None | ||
Description: | ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase) [Source:HGNC Symbol;Acc:12515] |
Percent Identity: | 100. % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MEGQRWLPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITEKYEVFRTEEE |
MEGQRWLPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITEKYEVFRTEEE | |
Retrocopy | MEGQRWLPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITEKYEVFRTEEE |
Parental | EKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLKKFLEESVSMSPEERARYLEN |
EKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLKKFLEESVSMSPEERARYLEN | |
Retrocopy | EKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLKKFLEESVSMSPEERARYLEN |
Parental | YDAIRVTHETSAHEGQTEAPSPDEKVDLHFIALVHVDGHLYELDGRKPFPINHGETSDETLLEDAIEVCK |
YDAIRVTHETSAHEGQTEAPSPDEKVDLHFIALVHVDGHLYELDGRKPFPINHGETSDETLLEDAIEVCK | |
Retrocopy | YDAIRVTHETSAHEGQTEAPSPDEKVDLHFIALVHVDGHLYELDGRKPFPINHGETSDETLLEDAIEVCK |
Parental | KFMERDPDELRFNAIALSAA |
KFMERDPDELRFNAIALSAA | |
Retrocopy | KFMERDPDELRFNAIALSAA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 0 .24 RPM |
SRP021940_cerebellum | 0 .10 RPM | 0 .62 RPM |
SRP021940_embryo | 0 .20 RPM | 0 .82 RPM |
SRP021940_placental_villous | 1 .49 RPM | 4 .14 RPM |
SRP021940_synovial_membrane | 0 .33 RPM | 0 .80 RPM |
SRP021940_testis | 0 .70 RPM | 1 .60 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000012261 | 1 retrocopy | |
Equus caballus | ENSECAG00000024190 | 1 retrocopy |
retro_ecab_400 ,
|
Myotis lucifugus | ENSMLUG00000003442 | 1 retrocopy | |
Mus musculus | ENSMUSG00000022111 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000006789 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000017114 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000009530 | 1 retrocopy |