RetrogeneDB ID: retro_mluc_362

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429800:369400..370093(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000029518
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: UCHL3
• Ensembl ID: ENSMLUG00000003442
• Aliases: None
• Description: ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase) [Source:HGNC Symbol;Acc:12515]

Sequence

>retro_mluc_362
ATGGAGCGACACCGCTGGCTGCCGCTGGAGGCCAACCCCGAGGTCACCAACCAGTTTCTCAAACAATTAGGCCTGCATCC
TAAATGGCAATTTGTCCATGTATATGGAATGGATCCTGAACTCCTTAGCATGGTACCAAGACCAGTGTGTGCAGTATTAC
TTCTCTTCCCTATTACAGAACAGTATGAAGTATTCAGAACAGAAGAGGAGGAAAAAATAAAATCTCAGGGACAAGATGTT
AAATCGTCAGTATATTTCATGAAGCAAACAATCAGCAATGCCTGTGGAACAATTGGACTGATCCATGCTATTGCCAACAA
TAAAGACAAGATGCATTTTGAATCTGGATCAACCTTGAAAAAATTTCTAGAGGAGTCTGTGTCAATGAGCCCTGAAGAAC
GAGCCAGATACCTGGAGAACTATGACGCTATTCGAGTTACTCATGAGACCAGTGCCCATGAAGGTCAGACTGAGGCACCA
AATATAGATGAAAAAGTAGATCTTCATTTTATTGCATTAGTTCACGTAGATGGGCATCTCTATGAATTAGATGGACGAAA
ACCATTTCCAATTAACCATGGTGAAACTAGTGATGAAACGTTATTAGAGGATGCCATAGAAGTTTGCAAGAAGTTTATGG
AACGTGACCCTGATGAATTGAGATTCAATGCAATTGCTCTTTCTGCAGCATAG

Alignment

ORF - retro_mluc_362 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 92.52 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  QFLKQLGLHPKWQFVDVYGMDPELLSMVPRPVCAVLLLFPITEKYEVFRTEEEEKIKSQGQDVKSSVYFM
          QFLKQLGLHPKWQFV.VYGMDPELLSMVPRPVCAVLLLFPITE.YEVFRTEEEEKIKSQGQDVKSSVYFM
Retrocopy QFLKQLGLHPKWQFVHVYGMDPELLSMVPRPVCAVLLLFPITEQYEVFRTEEEEKIKSQGQDVKSSVYFM

Parental  KQTISNACGTIGLIHAIANNKDKMHFESGSTLKKFLEESVSMSPEERARYLENYDAFKTAQKSNMIKGQV
          KQTISNACGTIGLIHAIANNKDKMHFESGSTLKKFLEESVSMSPEERARYLENYDA...........GQ.
Retrocopy KQTISNACGTIGLIHAIANNKDKMHFESGSTLKKFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQT

Parental  IKAPNIDEKVDLHFIALVHVDGHLYELDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIA
          ..APNIDEKVDLHFIALVHVDGHLYELDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIA
Retrocopy -EAPNIDEKVDLHFIALVHVDGHLYELDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIA

Parental  LSAA
          LSAA
Retrocopy LSAA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_362 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000012261	1 retrocopy	retro_cpor_1217,
Equus caballus	ENSECAG00000024190	1 retrocopy	retro_ecab_400,
Myotis lucifugus	ENSMLUG00000003442	1 retrocopy	retro_mluc_362 ,
Myotis lucifugus	ENSMLUG00000010138	2 retrocopies	retro_mluc_1216, retro_mluc_2113,
Mus musculus	ENSMUSG00000022111	1 retrocopy	retro_mmus_177,
Oryctolagus cuniculus	ENSOCUG00000006789	1 retrocopy	retro_ocun_382,
Otolemur garnettii	ENSOGAG00000017114	1 retrocopy	retro_ogar_2285,
Rattus norvegicus	ENSRNOG00000009530	1 retrocopy	retro_rnor_2227,