>retro_ecab_61
GCTTTTAGGAAAAGCTCATACCTCTCAAAACATGAGAGAATTCATTCTGCACAGAGACCTTACAAATGTAATGAGTGTGG
CAAAGCTTTTAATAAGTGCTTGAACCTTAGTAGACATCAGAAAATCCATACAAGAGAGAAACCATATAATTGTGATGTGG
GTGGCAAAATCTTTCATCAGAATTCAAACCTTGCAAGTCATCAGAGAATGGATACTGGCGAGAAACCTTACAAATGTAAT
GACTGCAGCAAGGCCTTTGCTAAACACTCAAGGCTTACTCAACATAAAAGAGTCCATACTGGAGAGAAACCTTACAAATG
TAATGAATGCAGCAAAGCCTTTGCTAGATGTTCAAGCCTTACTCAGCATAAGAGAATCCATACTGGAGAGAAACCTTACA
AATGTAGTGAATGCAGCAAAGCCTTTGCTGAACACTCAAAGCTTACTCAACATAAAAGAATCCATACTGGAGAAAAACCT
TACAAATGTAATGAATGCAAGAAAGCCTTTGCTAGACATTCAAGCCTTACTCAACATAAGAGAATCCATACTGGAGAGAA
ACCTTACAAATGTAATGAATGCAGCAAAGCCTTTCCTAGACACTCAATGCTTGCTCAACATAAAAGAATCCATACTGGAG
AAAAACCTTACAAATGTAATGAATGCAGCAAGTCCTTTGCTAAACGCTCAAGGCTTACTCAACATAAAAGAATCCATAAT
GGAGAGAAACCTTACAAATGTAGTGAATGCAGCAAAGCCTTTGCTAGACATTCAGGTCTTACTCAACATAAGATAATCCA
TACTGAAGAGAAACCTTGCAAATGTAGTAAGTGTGGCAAGGTATTTAGTCAAAAGTCAAGCCTTGAAAGTCATCAGAGAA
TTCATACTGGTGAGAAACCTTACAAATGTAATGAGTGTGGCAAATCTTTTACCCATTTTGTGTGCCTTAAAAGACATCAG
AAAATCCATACTGGAGAGAAACCTTACAAATGTAATGAGTGTGGCAAATCTTTTAACCGATTTGAAAGCCTTACAATACA
TCAGAAAATCCATACTGGAGAGAAACCTTACAAATGTAATGAGTGTGGTAAAGCCTTTATGGATGTTTCATACGTTACTC
GACATAAAAAAATCCATACTGGAGAGAAACCTTTCAAATGTAATGAGTGTGGCAAAACTTTTATGCAGGGTTCACATCTT
ACTCGACATAAGAAAATCCATACTGGAGAGAAACCTTACAAATGTAATGAGTGTGGCAAGGTCTGTAATCAAAAGTCAAA
CCTTGCAATTCATCAGAGAATTCATACTGGAGAGAAACCTTACAAATGTAATGAATGTGGCAAAGTGTTTGCTGAGCGTT
CAAGACTTACTCAGCATAAGAGAATCCATACTGGAGAGAAACCTTTCAAATGTACTGAGTGTGGCAAAACTTTTATG
ORF - retro_ecab_61 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
65.12 % |
Parental protein coverage: |
56.73 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | SNLTIHQRTHTGEKPYKCNECGKAFMERSSLTQHTRIHSGEKPYSCKECGKAFNQSSNLVIHQIIHTGEK |
| S.L..H.R.H....PYKCNECGKAF.....L..H..IH..EKPY.C...GK.F.Q.SNL..HQ...TGEK |
Retrocopy | SYLSKHERIHSAQRPYKCNECGKAFNKCLNLSRHQKIHTREKPYNCDVGGKIFHQNSNLASHQRMDTGEK |
|
Parental | PYKCNVCGKAFNVCSSLTRHQTIHTGEKPYKCTQCGKAFSHCSTLANHQRIHSDERPYKCNECGRAFNRF |
| PYKCN.C.KAF...S.LT.H...HTGEKPYKC..C.KAF..CS.L..H.RIH..E.PYKC.EC..AF... |
Retrocopy | PYKCNDCSKAFAKHSRLTQHKRVHTGEKPYKCNECSKAFARCSSLTQHKRIHTGEKPYKCSECSKAFAEH |
|
Parental | SNLTRHQRIHTGEKPYKCNVCGKDFMIRSHLWSHERIHTGEKPYKCNECGKAFSERSNLAQHKRIHTGEK |
| S.LT.H.RIHTGEKPYKCN.C.K.F...S.L..H.RIHTGEKPYKCNEC.KAF...S.LAQHKRIHTGEK |
Retrocopy | SKLTQHKRIHTGEKPYKCNECKKAFARHSSLTQHKRIHTGEKPYKCNECSKAFPRHSMLAQHKRIHTGEK |
|
Parental | PYKCNECGKDFTTRSHLWGHERIHTGEKPYKCNECGKAFTGSSNLTQHKKIHTGEKPYKCTVCGKAFSQN |
| PYKCNEC.K.F..RS.L..H.RIH.GEKPYKC.EC.KAF...S.LTQHK.IHT.EKP.KC..CGK.FSQ. |
Retrocopy | PYKCNECSKSFAKRSRLTQHKRIHNGEKPYKCSECSKAFARHSGLTQHKIIHTEEKPCKCSKCGKVFSQK |
|
Parental | SSLIVHQRIHTGEKPYKCHECGKAFKQSETLQRRTKIHTEERPYKCKECGKAFNRYSNFTIHQRIHTGEK |
| SSL..HQRIHTGEKPYKC.ECGK.F.....L.R..KIHT.E.PYKC.ECGK.FNR....TIHQ.IHTGEK |
Retrocopy | SSLESHQRIHTGEKPYKCNECGKSFTHFVCLKRHQKIHTGEKPYKCNECGKSFNRFESLTIHQKIHTGEK |
|
Parental | PYKCKECGQAFTWCSSLTIHQRIHTGEKPYKCKVCCKAFNQYSNLTKHQRIHTGEKPYKCKECCKAFTWY |
| PYKC.ECG.AF...S..T.H..IHTGEKP.KC..C.K.F.Q.S.LT.H..IHTGEKPYKC.EC.K..... |
Retrocopy | PYKCNECGKAFMDVSYVTRHKKIHTGEKPFKCNECGKTFMQGSHLTRHKKIHTGEKPYKCNECGKVCNQK |
|
Parental | TSLTIHQRIHTGEKPYKCKEC-SIFNQYSYLTIHQRIHTGEKPYKCKECGKAF |
| ..L.IHQRIHTGEKPYKC.EC...F...S.LT.H.RIHTGEKP.KC.ECGK.F |
Retrocopy | SNLAIHQRIHTGEKPYKCNECGKVFAERSRLTQHKRIHTGEKPFKCTECGKTF |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP021940_articular_cartilage |
0 .53 RPM |
2 .30 RPM |
SRP021940_cerebellum |
0 .16 RPM |
1 .87 RPM |
SRP021940_embryo |
1 .51 RPM |
4 .58 RPM |
SRP021940_placental_villous |
0 .05 RPM |
1 .68 RPM |
SRP021940_synovial_membrane |
0 .00 RPM |
2 .33 RPM |
SRP021940_testis |
0 .06 RPM |
1 .92 RPM |
Equus caballus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ecab_61 retrocopy.
Equus caballus was not studied using FANTOM5 data.
retro_ecab_61 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ecab_61 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
6 parental genes, and
7 retrocopies.