RetrogeneDB ID: retro_ogar_193

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873531.1:16474566..16476264(-)
• Located in intron of: ENSOGAG00000008358

Retrocopy information

• Ensembl ID: ENSOGAG00000027868
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000029638
• Aliases: None
• Description: None

Sequence

>retro_ogar_193
TGTGATGAATGTGGGCAAAGCTTTGTTTGGAATACTGGCCTGCTTAGACACCGAAGAACCCACTGGGAGAAACCCTATGA
ATGTGATAAGTGTGGAAAAGCCTTTACTGTGAGCTCAGCCCTGGTTCTGCATCAGAGAATTCATACTGGGGAGAAACCTT
ATCCTTGTAATTGGTGTATTAAAAGTTTCAGTCGGAGCTCAGACCTTATTAAACATCAAAGAGTCCACACTGGTGAAAAA
CCTTATAAATGTGATGAATGTGGGAAAGCCTTCAGTCAGAGCTCAGATCTTATTATACATCAGAGAATCCATACAGGAGA
AAAACCCTATCAGTGCAGTCATTGTAGTAAAAGTTTCAGCCAGCGCTCCGACCTGGTTAAACATCAGAGAATCCATACTG
GAGAGAAGCCTTATACATGTAACCAGTGTAACAAACATTTTAGTCAGAGTTCTGATGTTATAAAGCATCAGAGAATCCAC
ACTGGGGAGAAACCATATAAATGTGATGTGTGTGGGAAAGCCTTCAGTCAGAGCTCAGATCTTATTCTACATCAGAGAAT
CCATACTGGGGAGAAACCATATCCATGTAATCAATGTAGCAAAAGTTTCAGTCAGAACTCAGACCTTATTAAACATCGAA
GGATCCACACTGGAGAGAAACCCTATAAATGTAATGAATGTGGAAAAGCTTTTAATCAGAGCTCAGTCCTTATTCTGCAT
CAGAGAATTCATACTGGAGAGAAACCCTATCCATGTAATCAATGTAGCAAAACCTTCAGTAGGCTTTCAGATCTTATTAA
TCATCAACGAATTCACACTGGAGAGAAGCCTTACCCATGTAATCAGTGCAGTAAAATGTTTAGTCGAAGATCAGATCTTG
TTAAACATCATAGAATTCATACAGGTGAGAAACCCTATGAATGTGATGAGTGTGGGAAAACCTTTAGTCAGAGCTCCAAC
CTTATTCTTCATCAGCGAATCCACACTGGAGAAAAACCTTATCCATGTAGTGATTGTACTAAAAGCTTTAGTCGCCGTTC
AGATCTTGTTAAGCATCAAAGAATACACACTGGAGAGAAACCGTATACATGTAACCAGTGCAGTAAAAGTTTTAGTCAAA
GCTCAGACCTCACTAAACATCAAAGGGTACACTCTGGTGAAAAGCCCTATCATTGTGACAGTTGTGAGAAAGCCTTCAGT
CAGAGTTCTGACCTTATTCTTCATCAGAGAGTTCACACTGGAGAAAAACCATATCCATGCACACAGTGCAGCAAAAGTTT
CAGTCAGAACTCAGACCTTATCAAACACCAGAGAATCCACACAGGGGAAAAACCTTACAAATGTAGTGAGTGTGGGAAGG
CTTTCAGTCAGTGCTCAGCTCTTATCCTACATCAAAGAATCCACACTGGGGAGAAACCATATTCCTGTGATGAATGTGGC
AAAAGCTTTAGTCGGCGCTCTGATCTCATTAACCATCAAAGAATCCATACTGGGGAAAAGCCATATAAATGTAATGCCTG
TAGGAAAGCCTTCAAAACATGTACAGATCTTGTTCAACACCAGAAAATCCACACTGAGAAGAAACCCTACCAGTGTCTTC
AGTGCAACAGAAGTTTTAACCAGGTCTCTGATCTTATTAATCATGAGAAAGTCCATTCTGGGGAAGACAGTCCAGATGTG
ATGAATGCAGGAAAATCT

Alignment

ORF - retro_ogar_193 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 62.21 %
• Parental protein coverage: 60.21 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  CDECGKCFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGVKPYKCKECGKDFSGRTGL
          CDECG..F.....L..HRRTH..EKPY.CD.CGKAF...S.L..H.R.HTG.KPY.C..C.K.FS....L
Retrocopy CDECGQSFVWNTGLLRHRRTHW-EKPYECDKCGKAFTVSSALVLHQRIHTGEKPYPCNWCIKSFSRSSDL

Parental  IQHQRIHTGEKPYECDECGRPFRVSSALIRHQRIHTAKERRHKCDECGKSFAQSSGLVRHWRIHTGEKPY
          I.HQR.HTGEKPY.CDECG..F..SS.LI.HQRIHT..E....C..C.KSF.Q.S.LV.H.RIHTGEKPY
Retrocopy IKHQRVHTGEKPYKCDECGKAFSQSSDLIIHQRIHTG-EKPYQCSHCSKSFSQRSDLVKHQRIHTGEKPY

Parental  QCNVCGKAFSYRSALLSHQDIHNKVKRYHCKECGKAFSQNTGLILHQRIHTGEKPYQCNQCGKAFSQSAG
          .CN.C.K.FS..S....HQ.IH...K.Y.C..CGKAFSQ...LILHQRIHTGEKPY.CNQC.K.FSQ...
Retrocopy TCNQCNKHFSQSSDVIKHQRIHTGEKPYKCDVCGKAFSQSSDLILHQRIHTGEKPYPCNQCSKSFSQNSD

Parental  LILHQRIHSGERPYECNECGKAFSHSSHLIGHQRIHTGEKPYECDECGKTFRRSSHLIGHQRSHTGEKPY
          LI.H.RIH.GE.PY.CNECGKAF..SS.LI.HQRIHTGEKPY.C..C.KTF.R.S.LI.HQR.HTGEKPY
Retrocopy LIKHRRIHTGEKPYKCNECGKAFNQSSVLILHQRIHTGEKPYPCNQCSKTFSRLSDLINHQRIHTGEKPY

Parental  KCNECGRAFSQKSGLIEHQRIHTGERPYKCKECGKAFNGNTGLIQHLRIHTGEKPYQCNECGKAFIQRSS
          .CN.C...FS..S.L..H.RIHTGE.PY.C.ECGK.F.....LI.H.RIHTGEKPY.C..C.K.F..RS.
Retrocopy PCNQCSKMFSRRSDLVKHHRIHTGEKPYECDECGKTFSQSSNLILHQRIHTGEKPYPCSDCTKSFSRRSD

Parental  LIRHQRIHTGEKPYECDHCGKAFSVRSTLTVHERIHNGEKPYECNECGKAFSVSSDLIKHQRIHTGEKPY
          L..HQRIHTGEKPY.C..C.K.FS..S.LT.H.R.H.GEKPY.C..C.KAFS.SSDLI.HQR.HTGEKPY
Retrocopy LVKHQRIHTGEKPYTCNQCSKSFSQSSDLTKHQRVHSGEKPYHCDSCEKAFSQSSDLILHQRVHTGEKPY

Parental  ECDECGKVFSMSSALIKHQRIHTGEKPYECKECGKAFYVNSALINHKRIHSGEKPYECGECGKAFSQIST
          .C..C.K.FS..S.LIKHQRIHTGEKPY.C.ECGKAF...SALI.H.RIH.GEKPY.C.ECGK.FS..S.
Retrocopy PCTQCSKSFSQNSDLIKHQRIHTGEKPYKCSECGKAFSQCSALILHQRIHTGEKPYSCDECGKSFSRRSD

Parental  LIHHQRIHTGEKPYECDECGKAFRGSSNLTKHQKIHAKGERHHRCGECGKVFAHSSGLIRHQRIHTGERP
          LI.HQRIHTGEKPY.C..C.KAF.....L..HQKIH........C..C...F...S.LI.H...H.GE..
Retrocopy LINHQRIHTGEKPYKCNACRKAFKTCTDLVQHQKIHTE-KKPYQCLQCNRSFNQVSDLINHEKVHSGEDS

Parental  YECNDCGKT
          ......GK.
Retrocopy PDVMNAGKS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_193 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Equus caballus	ENSECAG00000023794	1 retrocopy	retro_ecab_61,
Macaca mulatta	ENSMMUG00000003688	1 retrocopy	retro_mmul_44,
Otolemur garnettii	ENSOGAG00000005643	1 retrocopy	retro_ogar_19,
Otolemur garnettii	ENSOGAG00000029638	2 retrocopies	retro_ogar_105, retro_ogar_193 ,
Pelodiscus sinensis	ENSPSIG00000004688	1 retrocopy	retro_psin_20,
Pelodiscus sinensis	ENSPSIG00000008115	1 retrocopy	retro_psin_11,