RetrogeneDB ID: | retro_ecab_646 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 25:14238265..14238578(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000015464 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 69.44 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYA-QGKRRYDRKQSGYGGQTKPIFR-KKAKTTKKIVL |
M.N..KT..TFCKKCG.HQPH..TQYKK.KDS....QGK....RKQSGYG.QTKPIF..KKAKTT.KIV. | |
Retrocopy | MANISKTHQTFCKKCGEHQPHNMTQYKKAKDSHVS<QGKQCHNRKQSGYGEQTKPIFK<KKAKTTMKIVP |
Parental | RLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF |
R.E..EPN.R.KRMLA.KR.KH.ELG.D.KRKGQ.IQF | |
Retrocopy | RPERIEPNYRPKRMLATKRRKHSELGRD-KRKGQMIQF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 192 .20 RPM |
SRP021940_cerebellum | 0 .00 RPM | 63 .05 RPM |
SRP021940_embryo | 0 .00 RPM | 187 .12 RPM |
SRP021940_placental_villous | 0 .05 RPM | 121 .14 RPM |
SRP021940_synovial_membrane | 0 .05 RPM | 138 .85 RPM |
SRP021940_testis | 0 .00 RPM | 58 .12 RPM |