RetrogeneDB ID: | retro_pabe_772 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 11:70126286..70126565(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL36A | ||
Ensembl ID: | ENSPPYG00000025837 | ||
Aliases: | None | ||
Description: | ribosomal protein L36a [Source:HGNC Symbol;Acc:10359] |
Percent Identity: | 68.82 % |
Parental protein coverage: | 65.49 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | SFRADSAHASMVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA |
.F...S....MVN.PKT..TF.KK.GKHQPHK.TQYKKGK..LY.QGK..Y..KQSG.GGQTKPIF.KK. | |
Retrocopy | TFYVNSMPTNMVNIPKTCQTFHKK*GKHQPHKLTQYKKGKNPLYVQGKQHYNKKQSG*GGQTKPIFQKKV |
Parental | KTTKKIVLRLECVEPNCRSKRML |
KTTKK.VL.LEC.EPNCR.KR.L | |
Retrocopy | KTTKKTVLSLECIEPNCRAKRRL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 34 .50 RPM |
SRP007412_cerebellum | 0 .00 RPM | 31 .74 RPM |
SRP007412_heart | 0 .00 RPM | 34 .71 RPM |
SRP007412_kidney | 0 .00 RPM | 57 .97 RPM |
SRP007412_liver | 0 .00 RPM | 56 .18 RPM |