Parental gene:

ENSCJAG00000004864

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:X:90635604..90640687(+)


>ENSCJAG00000004864
ATGGTCAACGTTCCTAAAACCCGCCGGACTTTCTGTAAGAAGTGTGGCAAGCACCAACCCCACAAAGTGACACAGTACAA
GAAGGGCAAAGATTCTCTGTATGCCCAGGGAAAGCGGCGTTATGACAGAAAGCAGAGTGGCTATGGTGGGCAAACTAAGC
CGATTTTCCGGAAAAAGGCTAAGACTACAAAGAAGATTGTGCTGAGGCTCGAGTGCGTTGAGCCCAACTGCAGATCTAAG
AGAATGCTGGCTATTAAAAGATGCAAACATTTTGAACTGGGAGGAGATAAGAAGAGAAAGGGCCAAGTGATCCAGTTCTA
A

Library Parental gene expression (RPM)
SRP051959_colon 24 .01 RPM
SRP051959_heart 24 .96 RPM
SRP051959_kidney 36 .05 RPM
SRP051959_liver 31 .34 RPM
SRP051959_lung 39 .99 RPM
SRP051959_lymph_node 70 .39 RPM
SRP051959_skeletal_muscle 25 .62 RPM
SRP051959_spleen 56 .81 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000008503 possible_ortholog 1 retrogene
retro_acar_98,
Ailuropoda melanoleuca ENSAMEG00000009384 possible_ortholog 1 retrogene
retro_amel_85,
Equus caballus ENSECAG00000015464 possible_ortholog 9 retrogenes
retro_ecab_129, retro_ecab_131, retro_ecab_204, retro_ecab_219, retro_ecab_265, retro_ecab_268, retro_ecab_294, retro_ecab_543, retro_ecab_646,
Homo sapiens ENSG00000241343 possible_ortholog 14 retrogenes
retro_hsap_1477, retro_hsap_1508, retro_hsap_1595, retro_hsap_1782, retro_hsap_2, retro_hsap_2015, retro_hsap_2274, retro_hsap_2632, retro_hsap_3461, retro_hsap_3819, retro_hsap_3981, retro_hsap_4154, retro_hsap_4299, retro_hsap_647,
Homo sapiens ENSG00000257529 possible_ortholog 1 retrogene
retro_hsap_1353,
Monodelphis domestica ENSMODG00000025578 possible_ortholog 2 retrogenes
retro_mdom_1878, retro_mdom_971,
Mus musculus ENSMUSG00000079435 possible_ortholog 1 retrogene
retro_mmus_4,
Nomascus leucogenys ENSNLEG00000007540 possible_ortholog 27 retrogenes
retro_nleu_1003, retro_nleu_1243, retro_nleu_1291, retro_nleu_153, retro_nleu_157, retro_nleu_1632, retro_nleu_178, retro_nleu_1833, retro_nleu_1903, retro_nleu_1959, retro_nleu_2145, retro_nleu_2345, retro_nleu_2381, retro_nleu_2699, retro_nleu_2965, retro_nleu_2995, retro_nleu_2996, retro_nleu_3027, retro_nleu_3028, retro_nleu_3059, retro_nleu_3111, retro_nleu_385, retro_nleu_453, retro_nleu_644, retro_nleu_805, retro_nleu_842, retro_nleu_991,
Otolemur garnettii ENSOGAG00000004551 possible_ortholog 6 retrogenes
retro_ogar_1160, retro_ogar_1681, retro_ogar_2390, retro_ogar_2519, retro_ogar_294, retro_ogar_470,
Pongo abelii ENSPPYG00000025837 possible_ortholog 37 retrogenes
retro_pabe_1141, retro_pabe_1174, retro_pabe_121, retro_pabe_1226, retro_pabe_1256, retro_pabe_1311, retro_pabe_141, retro_pabe_1463, retro_pabe_1539, retro_pabe_154, retro_pabe_1540, retro_pabe_1616, retro_pabe_1650, retro_pabe_1651, retro_pabe_1944, retro_pabe_195, retro_pabe_2011, retro_pabe_2331, retro_pabe_2443, retro_pabe_2622, retro_pabe_2857, retro_pabe_296, retro_pabe_3057, retro_pabe_3151, retro_pabe_3273, retro_pabe_3372, retro_pabe_3687, retro_pabe_3704, retro_pabe_441, retro_pabe_449, retro_pabe_55, retro_pabe_573, retro_pabe_574, retro_pabe_667, retro_pabe_73, retro_pabe_772, retro_pabe_931,
Pteropus vampyrus ENSPVAG00000001569 possible_ortholog 1 retrogene
retro_pvam_17,
Rattus norvegicus ENSRNOG00000011494 possible_ortholog 1 retrogene
retro_rnor_259,
Sarcophilus harrisii ENSSHAG00000013479 possible_ortholog 1 retrogene
retro_shar_467,
Ictidomys tridecemlineatus ENSSTOG00000027251 possible_ortholog 20 retrogenes
retro_itri_1171, retro_itri_1189, retro_itri_1364, retro_itri_1405, retro_itri_1471, retro_itri_161, retro_itri_1681, retro_itri_290, retro_itri_385, retro_itri_430, retro_itri_555, retro_itri_609, retro_itri_644, retro_itri_730, retro_itri_753, retro_itri_784, retro_itri_803, retro_itri_845, retro_itri_865, retro_itri_903,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_55 100.00 100.00
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2. retro_cjac_72 93.40 100.00
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3. retro_cjac_304 91.92 93.40
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4. retro_cjac_353 90.48 99.06
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Download FASTA sequences of all ENSCJAG00000004864 retrocopies