RetrogeneDB ID: | retro_ecab_788 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 4:55178416..55179341(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5A1 | ||
Ensembl ID: | ENSECAG00000021561 | ||
Aliases: | None | ||
Description: | ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle [Source:HGNC Symbol;Acc:823] |
Percent Identity: | 74.84 % |
Parental protein coverage: | 56.52 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | LPRRAGLVSRNALGSSFIAARNLHASNTRLQKTGTAEMSSILEERILGADTSVDLEETGRVLSIGDGIAR |
LP..A.LVS.NALGSS.I..RNL.ASNT.LQK.GTA..SS.L...ILGA.TSV.LEETG.V.SI..GIAR | |
Retrocopy | LPLQASLVSKNALGSSLIVTRNLLASNTCLQKAGTAKVSSVLKGCILGANTSVALEETGCVSSIDGGIAR |
Parental | VHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDA |
VHGLRNVQAEE..EF.SGLKGMSLNLEPDN..VVVFGN.KLIKEG.I.K..GAIV...VGE.LLG..VDA | |
Retrocopy | VHGLRNVQAEESIEFFSGLKGMSLNLEPDNAVVVVFGNNKLIKEGNIMKSAGAIVGILVGEKLLGHAVDA |
Parental | LGNAIDGKGPIGSKTRRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAI |
LGN.IDGKGP.G.KT.R.VGLKA.GIIP..SV.EPMQ.GI.AVDSLVPI.RGQ.ELI.GDRQTGKTS..I | |
Retrocopy | LGNVIDGKGPVGAKTCR*VGLKALGIIPPNSVQEPMQMGINAVDSLVPICRGQPELIVGDRQTGKTSM-I |
Parental | DTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSG |
D.II.QK.FND..DEKKKLYCIY..IGQKRSTVAQLVKRLT..D.MKYTIVV.ATASDA.P.QYL.PYS. | |
Retrocopy | DKIISQKCFNDESDEKKKLYCIYISIGQKRSTVAQLVKRLT--DTMKYTIVVLATASDAGPHQYLTPYSA |
Parental | -CSMGE-YFRDNGKHALIIYDDLSKQAVAYRQMS |
..SMGE..FRDNGKHALIIYD.LS....AY.QMS | |
Retrocopy | <LSMGE<KFRDNGKHALIIYDELSR*TIAYCQMS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 252 .88 RPM |
SRP021940_cerebellum | 0 .05 RPM | 814 .25 RPM |
SRP021940_embryo | 0 .10 RPM | 610 .24 RPM |
SRP021940_placental_villous | 0 .00 RPM | 390 .90 RPM |
SRP021940_synovial_membrane | 0 .05 RPM | 310 .76 RPM |
SRP021940_testis | 0 .13 RPM | 427 .59 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000002507 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000017648 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000006331 | 2 retrocopies | |
Equus caballus | ENSECAG00000021561 | 1 retrocopy |
retro_ecab_788 ,
|
Homo sapiens | ENSG00000152234 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000016560 | 1 retrocopy | |
Meleagris gallopavo | ENSMGAG00000009963 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000017500 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000009856 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000003570 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000000923 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000010973 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000003967 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000009130 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000009991 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000017177 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000007804 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000005118 | 1 retrocopy |