>retro_eeur_100
GCTGATGTTGTGAGAGATGCTTATGAGAAGGCCAAGATGCTGTGTGTACAGTATTACCTCGTAGCTCCAGAACTGAAAAT
CGAAGAATTCAATGCCCAAGCTCTAGACAAACCTATACAGGTAGTTTATGTGCCTTCACATCTGTTTCACATGTTATTTG
AGTTGTTCAAGAACTCAATGAGAGCAACAGTTGAACTGTATGAAGGTAGAAAGGAGGGTTGCCCAGCTATTAAGACCCTC
GTTACTCTAGGTCAGGAAGACTTGTCCATTAAGATAAGCGACCAAGGTGGTGGGGTCCCACTTCGAAAAATAGACCGTCT
TTTTAACTACATGTATTCAACTGCTCCCAGACCCAGCCTCGAGTCCAGAAGAGCGGCCCCCCTGGCTGGATTTGGTTATG
GTTTGCCGATTTGTCGCCTGTATGCTAGATATTTTCAAGGAGACTTAAAACTCTATTCCATGGAAGGAATGGGTACTGAT
ACCATCATTTACTTGAAGGCTCTTTCAAGTGAATCATTTGAGAGACTGCCAGTCTTTAACAAGTCTGCATGCCGCCATTA
CAAAACCGCTTCTGAAGCTGATGACTGGAGCAACCCGAGCAGCGAAGCCCGAGATGCTTCAAAATACAAA
ORF - retro_eeur_100 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
90. % |
Parental protein coverage: |
56.76 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | ADVVKDAYETAKMLCEQYYLVAPELEIEEFNAKAPDKPIQVVYVPSHLFHMLFELFKNSMRATVELYEDR |
| ADVV.DAYE.AKMLC.QYYLVAPEL.IEEFNA.A.DKPIQVVYVPSHLFHMLFELFKNSMRATVELYE.R |
Retrocopy | ADVVRDAYEKAKMLCVQYYLVAPELKIEEFNAQALDKPIQVVYVPSHLFHMLFELFKNSMRATVELYEGR |
|
Parental | KEAYPAVKTLVTLGKEDLSIKISDQGGGVPLRKIDRLFNYMYSTAPRPSLEPTRAAPLAGFGYGLPISRL |
| KE..PA.KTLVTLG.EDLSIKISDQGGGVPLRKIDRLFNYMYSTAPRPSLE..RAAPLAGFGYGLPI.RL |
Retrocopy | KEGCPAIKTLVTLGQEDLSIKISDQGGGVPLRKIDRLFNYMYSTAPRPSLESRRAAPLAGFGYGLPICRL |
|
Parental | YARYFQGDLKLYSMEGVGTDAVIYLKALSSESFERLPVFNKSAWRHYKTTPEADDWSNPSSEPRDASKYK |
| YARYFQGDLKLYSMEG.GTD..IYLKALSSESFERLPVFNKSA.RHYKT..EADDWSNPSSE.RDASKYK |
Retrocopy | YARYFQGDLKLYSMEGMGTDTIIYLKALSSESFERLPVFNKSACRHYKTASEADDWSNPSSEARDASKYK |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .00 RPM |
20 .95 RPM |
SRP017611_kidney |
0 .94 RPM |
96 .02 RPM |
SRP017611_liver |
0 .00 RPM |
1 .45 RPM |
Erinaceus europaeus was not studied using ChIP-Seq data.
Erinaceus europaeus was not studied using EST data.
Erinaceus europaeus was not studied using FANTOM5 data.
retro_eeur_100 was not experimentally validated.
Retrocopy orthology:
Erinaceus europaeus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
5 retrocopies.