RetrogeneDB ID: | retro_eeur_466 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_314625:23945..25164(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBAP1 | ||
Ensembl ID: | ENSEEUG00000011672 | ||
Aliases: | None | ||
Description: | ubiquitin associated protein 1 [Source:HGNC Symbol;Acc:12461] |
Percent Identity: | 87.83 % |
Parental protein coverage: | 80.99 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MASKKLGADLHGTFSYLDDVPFKIGDKFKTPAKVGLPIGFSLPDCLQVVREVQYDFSLEKKTIEWAEDIK |
M.SKKLGADLHGTFSYLDDV.FKIGDKFKTPAKVGLPIGFSLPDCLQVVREVQYDFSLEKKTIEWAEDIK | |
Retrocopy | MVSKKLGADLHGTFSYLDDVTFKIGDKFKTPAKVGLPIGFSLPDCLQVVREVQYDFSLEKKTIEWAEDIK |
Parental | KIQ-EAQREAERRAEEAEAKVNSKSGPEGDSKMSFSRTHSAATMPPPINPILASLQHNSILTPTRVSSSA |
KIQ.EA...AE....EAEAKVNSK.GPEGDS.MSFS.THSAA.M.PPINPILASLQHN.ILTPT..SSSA | |
Retrocopy | KIQ>EAKLRAE----EAEAKVNSKRGPEGDSIMSFSKTHSAARMLPPINPILASLQHNRILTPTHISSSA |
Parental | MKQKVLSPTHTKADFNPADFECEEDPFDNLELKTIDEKEELRNILVGTTGPIMAQLLDSNLPRGSSGSML |
MKQKVLSP.HTK.DFNPA.FECEEDPFDN.ELKTIDEKEELRNILVGTTGPIMAQLLDSNLPRGSS.S.L | |
Retrocopy | MKQKVLSPPHTKTDFNPANFECEEDPFDNVELKTIDEKEELRNILVGTTGPIMAQLLDSNLPRGSSRSVL |
Parental | QDEEVLASLEQATLDFKPLHKPNGFITLPQLGNCEKMPLSSKVSLPPVPAVSNIKSLSFPKLDSDDSNQK |
QDEEVLASLEQA.LD.KPLHKPNGFITLPQLGNCEKMPLSSKVSLPPV.AVSNI.SLSFPKLDSDD.NQK | |
Retrocopy | QDEEVLASLEQAILDSKPLHKPNGFITLPQLGNCEKMPLSSKVSLPPVHAVSNIISLSFPKLDSDDRNQK |
Parental | TTKLASTFHSTSCLRSGKSRSSPKPSTQSSASELNGHHTLGLSALNLDSGTEAPSLTPSDLTSQMPSLSV |
TTKLA.TF.S.SC.RS.K..SSPK.STQSSASELNGHHT.GLSALNLDSG.E.PSLTPSDLT.QMPSLSV | |
Retrocopy | TTKLANTFYSISCFRSDKFQSSPKLSTQSSASELNGHHTFGLSALNLDSGSELPSLTPSDLTTQMPSLSV |
Parental | LSVCTQESSPPNTGSTVTP-NFSTSQVPNTPSCPQAYSELQTLSPSERQCVETVVNMGYSY |
LSVCT.ESSPPNTGS.VTP.NFS.SQV.NTPSCPQAYSEL.TLSPSE..CVETVVNMGY.Y | |
Retrocopy | LSVCTEESSPPNTGSMVTPTNFSMSQVLNTPSCPQAYSEL*TLSPSEQKCVETVVNMGYAY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 1 .29 RPM | 30 .46 RPM |
SRP017611_kidney | 1 .50 RPM | 45 .01 RPM |
SRP017611_liver | 0 .96 RPM | 26 .69 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Erinaceus europaeus | ENSEEUG00000011672 | 1 retrocopy |
retro_eeur_466 ,
|
Myotis lucifugus | ENSMLUG00000013063 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000015802 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000009100 | 3 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000028294 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000013035 | 2 retrocopies |