RetrogeneDB ID: | retro_tsyr_846 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_215910:2981..3774(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBAP1 | ||
Ensembl ID: | ENSTSYG00000013035 | ||
Aliases: | None | ||
Description: | ubiquitin associated protein 1 [Source:HGNC Symbol;Acc:12461] |
Percent Identity: | 75.28 % |
Parental protein coverage: | 65.58 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | EKEELRNILVGTTGPIMAQLLDSNLPRGGSGSVLQDEEVLASLERATLDFKPLHKPNGFITLPQLGNCEK |
EK...R.IL.G.T.PIM.QLLDSNLPRGGSG.VLQDE.VLASLE..TL.FK.LHK..GFITL.QLGN.EK | |
Retrocopy | EKHSGRKILLGATAPIMTQLLDSNLPRGGSGFVLQDEVVLASLEWVTLNFKSLHKLKGFITLSQLGNYEK |
Parental | MSLSSKVS-LPPIPAVSNIKSLSFPKLDSDDSNQKTAKLASTFHSTSCLRNGTFQNSLKPFTQSSASDLN |
MSLSSKVS.L.PIPAVSNIKSLSFP..DSDDSN.KTAKLASTFHST.CL.NGTFQNSLKPFTQSSA..LN | |
Retrocopy | MSLSSKVS<LLPIPAVSNIKSLSFP*PDSDDSNHKTAKLASTFHSTFCLHNGTFQNSLKPFTQSSARELN |
Parental | AHCTLGLSALNLDNGTEMPTLASSLMPSLSVLSVCT-EESLPNVTP----PNFAMSQVPNMPSCPQAYPE |
.H.TLGLSALNL...TEMP.L..S.MPSL.VLSVCT..ES.PN..P....PNF.MSQVPNMP....AY.E | |
Retrocopy | GHHTLGLSALNLNSSTEMPVLKPSQMPSLWVLSVCT<KESSPNIGPMVTSPNFSMSQVPNMPGFLHAYSE |
Parental | LQTLSPSERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHGQLCEKGFDPL |
L..LSPSE.QCVETVV..GYSYECV..AM.KKGENI.QIL.YLFAHGQL...GF.PL | |
Retrocopy | L*MLSPSEWQCVETVVIKGYSYECVVTAM*KKGENIKQILNYLFAHGQLGKRGFYPL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Erinaceus europaeus | ENSEEUG00000011672 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000013063 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000015802 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000009100 | 3 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000028294 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000013035 | 2 retrocopies |
retro_tsyr_1908, retro_tsyr_846 ,
|