Parental gene: | UBAP1, ENSEEUG00000011672 |
| Aliases: | None |
| Description: | ubiquitin associated protein 1 [Source:HGNC Symbol;Acc:12461] |
| Organism: | Hedgehog (Erinaceus europaeus) |
| Coordinates: | scaffold_378691:9485..41850(+) |
>ENSEEUG00000011672
ATGGCTTCTAAGAAGTTGGGTGCAGATCTTCATGGGACTTTCAGTTACCTTGATGATGTTCCATTTAAGATAGGAGACAA
ATTCAAAACACCAGCTAAAGTTGGTCTACCTATTGGCTTCTCCTTGCCTGATTGTTTGCAGGTTGTCAGAGAAGTACAGT
ATGACTTCTCCTTGGAAAAGAAGACCATTGAATGGGCTGAAGATATTAAGAAGATCCAGGAAGCCCAGCGGGAAGCAGAG
CGCAGGGCTGAAGAAGCTGAGGCTAAAGTGAATTCTAAGAGTGGTCCAGAGGGTGACAGCAAAATGAGCTTCTCCAGGAC
TCACAGTGCAGCCACGATGCCGCCCCCCATTAACCCCATCCTCGCCAGCTTACAGCACAACAGCATCCTCACCCCCACTC
GCGTCAGCAGCAGTGCCATGAAACAGAAAGTCCTCAGCCCAACCCACACCAAGGCAGATTTTAACCCAGCTGACTTTGAG
TGTGAAGAAGACCCATTTGATAATCTGGAGTTAAAAACTATCGACGAGAAGGAGGAGCTGAGAAATATTCTGGTAGGAAC
CACTGGACCCATTATGGCTCAGTTATTGGACAGTAATTTGCCCAGAGGAAGCTCTGGGTCTATGTTACAGGACGAGGAGG
TCCTGGCGTCTCTGGAACAGGCCACCCTGGATTTCAAGCCTCTTCACAAACCTAACGGCTTTATAACCTTACCACAGTTG
GGCAACTGTGAAAAGATGCCGCTGTCTTCCAAAGTGTCCCTGCCCCCTGTCCCTGCAGTAAGCAATATTAAATCCCTGTC
CTTTCCCAAACTTGACTCTGATGACAGCAATCAGAAGACCACCAAACTGGCAAGCACTTTCCATAGCACATCCTGCCTCC
GCAGTGGCAAGTCCCGGAGTTCCCCAAAGCCTTCCACCCAAAGCAGTGCCAGTGAGCTCAATGGGCATCACACTCTTGGC
CTTTCAGCTCTGAACTTGGACAGTGGCACAGAGGCGCCGTCTCTGACCCCCTCTGACCTGACTTCCCAGATGCCTTCCCT
CTCTGTCTTGTCTGTGTGCACACAAGAGTCGTCACCTCCAAATACAGGTTCCACGGTCACACCTAATTTTTCAACGTCAC
AAGTGCCCAACACGCCCAGCTGTCCCCAGGCTTATTCTGAACTACAGACGCTCTCCCCAAGTGAGCGGCAGTGTGTGGAG
ACAGTGGTCAACATGGGCTACTCGTATGAGTGTGTCCTGAGAGCCATGAAGAAGAAAGGAGAGAGTATCGAGCAGATACT
CGACTATCTCTTTGCACACGGACAGCTCTGTGAGAAGGGCTTTGACCCTTTCTTAGTGGAGGAGGCTCTAGAGATGCACC
AGTGTTCAGAGGAAAAGATGCTGGAATTTCTTCAGCTAATGAGCAAATTTAAGGAAATGGGCTTTGAACTAAAAGACATT
AAGGAAGTCCTGCTTTTACACAACAACGACCAGGACAATGCTCTGGAGGACCTCATGGCTCGGGCAGGAGCCAGCTGA
ATGGCTTCTAAGAAGTTGGGTGCAGATCTTCATGGGACTTTCAGTTACCTTGATGATGTTCCATTTAAGATAGGAGACAA
ATTCAAAACACCAGCTAAAGTTGGTCTACCTATTGGCTTCTCCTTGCCTGATTGTTTGCAGGTTGTCAGAGAAGTACAGT
ATGACTTCTCCTTGGAAAAGAAGACCATTGAATGGGCTGAAGATATTAAGAAGATCCAGGAAGCCCAGCGGGAAGCAGAG
CGCAGGGCTGAAGAAGCTGAGGCTAAAGTGAATTCTAAGAGTGGTCCAGAGGGTGACAGCAAAATGAGCTTCTCCAGGAC
TCACAGTGCAGCCACGATGCCGCCCCCCATTAACCCCATCCTCGCCAGCTTACAGCACAACAGCATCCTCACCCCCACTC
GCGTCAGCAGCAGTGCCATGAAACAGAAAGTCCTCAGCCCAACCCACACCAAGGCAGATTTTAACCCAGCTGACTTTGAG
TGTGAAGAAGACCCATTTGATAATCTGGAGTTAAAAACTATCGACGAGAAGGAGGAGCTGAGAAATATTCTGGTAGGAAC
CACTGGACCCATTATGGCTCAGTTATTGGACAGTAATTTGCCCAGAGGAAGCTCTGGGTCTATGTTACAGGACGAGGAGG
TCCTGGCGTCTCTGGAACAGGCCACCCTGGATTTCAAGCCTCTTCACAAACCTAACGGCTTTATAACCTTACCACAGTTG
GGCAACTGTGAAAAGATGCCGCTGTCTTCCAAAGTGTCCCTGCCCCCTGTCCCTGCAGTAAGCAATATTAAATCCCTGTC
CTTTCCCAAACTTGACTCTGATGACAGCAATCAGAAGACCACCAAACTGGCAAGCACTTTCCATAGCACATCCTGCCTCC
GCAGTGGCAAGTCCCGGAGTTCCCCAAAGCCTTCCACCCAAAGCAGTGCCAGTGAGCTCAATGGGCATCACACTCTTGGC
CTTTCAGCTCTGAACTTGGACAGTGGCACAGAGGCGCCGTCTCTGACCCCCTCTGACCTGACTTCCCAGATGCCTTCCCT
CTCTGTCTTGTCTGTGTGCACACAAGAGTCGTCACCTCCAAATACAGGTTCCACGGTCACACCTAATTTTTCAACGTCAC
AAGTGCCCAACACGCCCAGCTGTCCCCAGGCTTATTCTGAACTACAGACGCTCTCCCCAAGTGAGCGGCAGTGTGTGGAG
ACAGTGGTCAACATGGGCTACTCGTATGAGTGTGTCCTGAGAGCCATGAAGAAGAAAGGAGAGAGTATCGAGCAGATACT
CGACTATCTCTTTGCACACGGACAGCTCTGTGAGAAGGGCTTTGACCCTTTCTTAGTGGAGGAGGCTCTAGAGATGCACC
AGTGTTCAGAGGAAAAGATGCTGGAATTTCTTCAGCTAATGAGCAAATTTAAGGAAATGGGCTTTGAACTAAAAGACATT
AAGGAAGTCCTGCTTTTACACAACAACGACCAGGACAATGCTCTGGAGGACCTCATGGCTCGGGCAGGAGCCAGCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 26 .69 RPM |
| SRP017611_kidney | 45 .01 RPM |
| SRP017611_brain | 30 .46 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Myotis lucifugus | ENSMLUG00000013063 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000015802 | ortholog_one2one | 1 retrogene | |
| Ochotona princeps | ENSOPRG00000009100 | ortholog_one2one | 3 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000028294 | ortholog_one2one | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000013035 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_eeur_466 | 87.83 | 80.99 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSEEUG00000011672 retrocopies