RetrogeneDB ID: | retro_eeur_548 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_342493:94284..94987(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CCNB1 | ||
Ensembl ID: | ENSEEUG00000005724 | ||
Aliases: | None | ||
Description: | cyclin B1 [Source:HGNC Symbol;Acc:1579] |
Percent Identity: | 83.4 % |
Parental protein coverage: | 58.38 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | KLPKPVEKEP-MPL-ERESKPELEPEPPREEKLSPEPILVDTPSASPMETSGCAPAEEDLCQA---FSDV |
.LPKPV.KEP..PL.ERE.KPEL.PE.PREE.LSPEPIL.DTPS.S.MET..CAPAEEDLCQA...FSDV | |
Retrocopy | QLPKPV*KEP>IPLVEREPKPELLPELPREERLSPEPILLDTPSVSSMETPECAPAEEDLCQALLQFSDV |
Parental | ILAVSDVDAEDGADPNLCSEYVKDIYVYLRQLEEEQAVKPKYLLGREVTGNMRAILIDWLVQVQMKFRLL |
ILAVSDVDAE.GADPNLCSEYVKDIY.YLRQLEEEQAVKP.YLLG.EVTGNMR.ILID.LVQVQMKFRLL | |
Retrocopy | ILAVSDVDAENGADPNLCSEYVKDIYAYLRQLEEEQAVKPRYLLGHEVTGNMRVILID*LVQVQMKFRLL |
Parental | QETMYMTVSIIDRFMQNNCVPKKMLQLVGVTAMFVASKYEEMYPPEIGDFAFVTDNTYTKHQIRQMEMKI |
QETMY.TVSIIDRFMQNN.VPKKMLQ.VG.TAMF.ASKY.EMY.PEI.DFAFVTDNT.TKHQ.RQME..I | |
Retrocopy | QETMYKTVSIIDRFMQNN*VPKKMLQPVGATAMFIASKYKEMYLPEISDFAFVTDNTCTKHQVRQMEINI |
Parental | LRALNFGLGRPLPLHFLRRASKIGE |
LRALNF.LG.PLPLHFL.R.SKIGE | |
Retrocopy | LRALNFCLGCPLPLHFLHRVSKIGE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 1 .61 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .94 RPM |
SRP017611_liver | 0 .00 RPM | 0 .16 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000014239 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000007705 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000016075 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000014629 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000005724 | 2 retrocopies |
retro_eeur_386, retro_eeur_548 ,
|
Mustela putorius furo | ENSMPUG00000014648 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000002451 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000007685 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000011817 | 4 retrocopies | |
Tarsius syrichta | ENSTSYG00000008928 | 1 retrocopy |