RetrogeneDB ID: retro_mputfur_58

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896967.1:2502650..2503922(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000019826
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000014648
• Aliases: None
• Description: None

Sequence

>retro_mputfur_58
ATGGCGCTCCGGGCCACCAGGAACGCAAAAGTTAATGTGGAAAATAAGGCGAAGATCAGCATGGCAGGCGCAAAGCGCGT
GCCTCTGGCCATGATTGCGGCCTCCAAGCCCGGGCTGAGGCCGAGAACAGCCCTCGGAGACATTGGTAACAAAGTCAGCG
AACAACCACAGGCCAAACTGCCTCTGAAAAAGGAAGCAAAAACTTTGGTTCCTGGAAAAGTTATTGCTAAAAAATTACCT
AAACCTCTGGAGAAGGCACCCGAGCCTGTGCCAGAACCTGAGCCAGAACCTGAGCCCGTTAAAGAAGAAAAACTTTCGCC
TGAGCCTATTTTGGTTGATACTCCCTCTCCAAGCCCAATGGAAACATCTGGATGTGCCCCTGCAGAAGAATATCTGTGTC
AGGCATTCTCTGATGTAATTCTTGCAGTGAATGATGTGGATGCCAAAGATGGAGCTGATCCAAACCTTTGTAGTGAATAT
GTGAAAGATATTTATGCTTATCTGAGACAACTTGAGGAAGAGCAAGCCATCAGACCAAAATACCTACTGGGTCGTGAAGT
CACTGGAAACATGAGAGCTATCCTTATTGACTGGCTAGTACAGGTTCAGATGAAGTTCAGGTTACTTCAGGAGACCATGT
ACATGACTGTTTCCATTATTGATCGGTTCATGCAGAATAATTGTGTGCCCAAGAAGATGCTGCAGCTGGTTGGTGTCACT
GCCATGTTTATTGCAAGCAAATATGAAGAAATGTACCCTCCAGAAATTGGTGACTTTGCCTTTGTGACTGACAACACTTA
TACTAAGCACCAAATCAGACAGATGGAAATGAAGATTCTAATATCTTTAAATTTTGGTCTGGGCCGCCCTCTACCCCTGC
ATTTCCTTTGGAGAGCATCTAAGATCGGAGAGGTTGATGTTGAGCAACATACTTTGGCCAAATACCTGATGGAACTAACT
ATGTTGGACTACGATATGGTGCACTTTCCTCCTTCTCAGATTGCAGCAGGAGCTTTTTGCTTAGCACTGAAAATTCTTGA
AAACGGTGAATGGACACCAACTCTACAGCATTATCTATCATACACTGAAGAATCCCTTCTAAGTGTTATGCAACAACTAG
CTAAGAATATAGTCATGGTGAATCGTGGACTTACAAAGCACATGACCATCAAGAACAAGTATGCCACATCTAAGCACGCA
AAGATCAGCACGCTGGCACAGCTAAATTCTGCACTAGTTCAAGATTTAGCCAAGGCTGTGGCAAAGGTGTAA

Alignment

ORF - retro_mputfur_58 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 96.96 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MALRVTRNAKVNVENKAKISMAGAKRVPLATTAASKPGLRPRTALGDIGNKVSEQPQAKLPLKKEAKTLV
          MALR.TRNAKVNVENKAKISMAGAKRVPLA..AASKPGLRPRTALGDIGNKVSEQPQAKLPLKKEAKTLV
Retrocopy MALRATRNAKVNVENKAKISMAGAKRVPLAMIAASKPGLRPRTALGDIGNKVSEQPQAKLPLKKEAKTLV

Parental  PGKVIAKKLPKPLEKAPEPVPEPEPEPEPEPEPVKEEKLSPEPILVDTPSPSPMETSGCAPAEEYLCQAF
          PGKVIAKKLPKPLEKAPEPV....PEPEPEPEPVKEEKLSPEPILVDTPSPSPMETSGCAPAEEYLCQAF
Retrocopy PGKVIAKKLPKPLEKAPEPV----PEPEPEPEPVKEEKLSPEPILVDTPSPSPMETSGCAPAEEYLCQAF

Parental  SDVILAVNDVDAEDGADPNLCSEYVKDIYAYLRQLEEEQAIRPKYLLGREVTGNMRAILIDW-VQVQMKF
          SDVILAVNDVDA.DGADPNLCSEYVKDIYAYLRQLEEEQAIRPKYLLGREVTGNMRAILIDW.VQVQMKF
Retrocopy SDVILAVNDVDAKDGADPNLCSEYVKDIYAYLRQLEEEQAIRPKYLLGREVTGNMRAILIDWLVQVQMKF

Parental  RLLQETMYMTVSIIDRFMQNNCVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQME
          RLLQETMYMTVSIIDRFMQNNCVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQME
Retrocopy RLLQETMYMTVSIIDRFMQNNCVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQME

Parental  MKILRSLNFGLGRPLPLHFLRRASKIGEVDVEQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFCLALKIL
          MKIL.SLNFGLGRPLPLHFL.RASKIGEVDVEQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFCLALKIL
Retrocopy MKILISLNFGLGRPLPLHFLWRASKIGEVDVEQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFCLALKIL

Parental  DNGEWTPTLQHYLSYTEESLLSVMQHLAKNIVMVNRGLTKHMTIKNKYATSKHAKISTLAQLNSALVQDL
          .NGEWTPTLQHYLSYTEESLLSVMQ.LAKNIVMVNRGLTKHMTIKNKYATSKHAKISTLAQLNSALVQDL
Retrocopy ENGEWTPTLQHYLSYTEESLLSVMQQLAKNIVMVNRGLTKHMTIKNKYATSKHAKISTLAQLNSALVQDL

Parental  AKAVAKV
          AKAVAKV
Retrocopy AKAVAKV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_58 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_58 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 15 parental genes, and 26 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000014239	2 retrocopies	retro_btau_1317, retro_btau_600,
Canis familiaris	ENSCAFG00000007705	1 retrocopy	retro_cfam_213,
Callithrix jacchus	ENSCJAG00000016075	1 retrocopy	retro_cjac_4137,
Cavia porcellus	ENSCPOG00000014629	1 retrocopy	retro_cpor_13,
Erinaceus europaeus	ENSEEUG00000005724	2 retrocopies	retro_eeur_386, retro_eeur_548,
Felis catus	ENSFCAG00000001572	1 retrocopy	retro_fcat_840,
Myotis lucifugus	ENSMLUG00000012856	1 retrocopy	retro_mluc_1020,
Mustela putorius furo	ENSMPUG00000014648	1 retrocopy	retro_mputfur_58 ,
Mus musculus	ENSMUSG00000041431	5 retrocopies	retro_mmus_1170, retro_mmus_1550, retro_mmus_2508, retro_mmus_2615, retro_mmus_3023,
Procavia capensis	ENSPCAG00000002451	1 retrocopy	retro_pcap_176,
Rattus norvegicus	ENSRNOG00000018635	2 retrocopies	retro_rnor_568, retro_rnor_814,
Sarcophilus harrisii	ENSSHAG00000007685	1 retrocopy	retro_shar_290,
Tupaia belangeri	ENSTBEG00000011817	4 retrocopies	retro_tbel_1185, retro_tbel_3200, retro_tbel_4185, retro_tbel_4531,
Tarsius syrichta	ENSTSYG00000008928	1 retrocopy	retro_tsyr_232,
Tursiops truncatus	ENSTTRG00000002874	2 retrocopies	retro_ttru_524, retro_ttru_59,