RetrogeneDB ID: | retro_etel_1058 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_205165:2504..3497(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ABCF2 | ||
Ensembl ID: | ENSETEG00000008032 | ||
Aliases: | None | ||
Description: | ATP-binding cassette, sub-family F (GCN20), member 2 [Source:HGNC Symbol;Acc:71] |
Percent Identity: | 88.36 % |
Parental protein coverage: | 52.44 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | DADKAEMRASRILHGLGFTPAMQRKKLKDFSGGWRMRVALARALFIRPFMLLLDEPTNHLDLDACVWLEE |
.ADKAEMRASRILHGLGFTPA.QRK.LKDFSGGWRMRVALARALFIRPFMLLLDEP.NHLDLDA.V.LEE | |
Retrocopy | EADKAEMRASRILHGLGFTPALQRKQLKDFSGGWRMRVALARALFIRPFMLLLDEPSNHLDLDAFVRLEE |
Parental | ELKTFKRILVLVSHSQDFLNGVCTNIIHMHNKKLKYYTGNYDQYVKTRLELEENQMKRFHWEQDQIAHMK |
.LKTF.RIL.LVSHS.DFLNGVCT.I.HMH.KKL.YYTGNYDQY.KTRLELEENQ.KR.HWEQDQI.HMK | |
Retrocopy | -LKTFTRILDLVSHSRDFLNGVCTSIVHMH-KKLQYYTGNYDQYAKTRLELEENQTKRVHWEQDQITHMK |
Parental | NYIARFG-HGSAKLARQAQSKEKTLQKMMASGLTERVVSDKTLSFYFPPCGKIPPPVIMVQNVSFRYTKD |
N..ARF..HGSAKLARQAQSKEKTLQ.MMA.GL.ERVV.DKTL.FYFPPCGKIPPPVIMVQNVSFRYTKD | |
Retrocopy | N*VARFA<HGSAKLARQAQSKEKTLQTMMALGLAERVVRDKTLLFYFPPCGKIPPPVIMVQNVSFRYTKD |
Parental | GPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIRKHSHVKIGRYHQHLQEQLDLDLS |
GPCIYNNLEFGI.L...VALVGP.GAGKSTLLKLLTGELLPTDGMIRKHSHVKIGRYH.HLQEQLDLD.S | |
Retrocopy | GPCIYNNLEFGIVLHR*VALVGPSGAGKSTLLKLLTGELLPTDGMIRKHSHVKIGRYHRHLQEQLDLDRS |
Parental | PLEYMMKCYPEIKEKEEMRKIIGRYGLTGKQQVSPIRNLSDGQKCRVCL-AWLAW |
PLE.M.KC.PEIKEKEEMRKIIGRYGL.GKQQVSPIRNLSDGQKCRVCL.AWLAW | |
Retrocopy | PLEHMRKCHPEIKEKEEMRKIIGRYGLPGKQQVSPIRNLSDGQKCRVCL>AWLAW |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000004830 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000020371 | 3 retrocopies | |
Dipodomys ordii | ENSDORG00000012672 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000008032 | 2 retrocopies |
retro_etel_1041, retro_etel_1058 ,
|
Macaca mulatta | ENSMMUG00000006679 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000000245 | 1 retrocopy |