RetrogeneDB ID: | retro_etel_1087 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_209674:19599..19888(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FAM60A | ||
Ensembl ID: | ENSETEG00000002888 | ||
Aliases: | None | ||
Description: | family with sequence similarity 60, member A [Source:HGNC Symbol;Acc:30702] |
Percent Identity: | 68.04 % |
Parental protein coverage: | 57.14 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | LVKRWKKLPAG-SKKNWNHVVDARAGPSLKTTLKPKKVKTLSGNRIKSNQISKLQKEFKRQNSDAHSTTS |
LVKRWK.LP.G..K.NW.HVVDARAGP.LKT.LKPK...T.SG.R.K.N.ISK.Q..FK..NSDAHS..S | |
Retrocopy | LVKRWKTLPTG>KKINWSHVVDARAGPDLKTALKPKQG*TRSGHRTKRNPISKVQNGFKHPNSDAHSSPS |
Parental | SASPAQSPCYSNQSDDGSDTEMASGSN |
SASPAQSPC..NQ.DDGS...MAS.S. | |
Retrocopy | SASPAQSPCSRNQPDDGSAAGMASASS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000010685 | 4 retrocopies | |
Callithrix jacchus | ENSCJAG00000001215 | 3 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000016873 | 2 retrocopies | |
Equus caballus | ENSECAG00000009655 | 2 retrocopies | |
Erinaceus europaeus | ENSEEUG00000012617 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000002888 | 2 retrocopies |
retro_etel_1087 , retro_etel_427,
|
Felis catus | ENSFCAG00000008955 | 4 retrocopies | |
Microcebus murinus | ENSMICG00000003460 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000008927 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000046048 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000049943 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000006261 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000007097 | 1 retrocopy |