RetrogeneDB ID: | retro_etel_1100 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_211428:4348..4747(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000004305 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL8 | ||
Ensembl ID: | ENSETEG00000007104 | ||
Aliases: | None | ||
Description: | ribosomal protein L8 [Source:HGNC Symbol;Acc:10368] |
Percent Identity: | 76.3 % |
Parental protein coverage: | 51.75 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | KLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKARRN |
........YATVISH.PETKKTRVK.PS.SKK.ISSANRAVVGVVAGGG.IDKPILKAGRA.HKYKA.R. | |
Retrocopy | RILETEASYATVISHSPETKKTRVKVPSDSKKIISSANRAVVGVVAGGGHIDKPILKAGRACHKYKATRS |
Parental | CWPRVRGVTMNPVEHPFGGGNHQHI-GKPSTIRRDAPAGRKVGLIAARRTGRLR-GTKTVQEKEN |
CWP.V..V...PVE.PFGGG.HQH..GKPST..RDAPAGRKVGL.AA..TGRLR.GTKTVQEKEN | |
Retrocopy | CWPCVQVVGTSPVEPPFGGGHHQHM<GKPSTLFRDAPAGRKVGLLAACWTGRLR>GTKTVQEKEN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000017933 | 1 retrocopy | |
Ailuropoda melanoleuca | ENSAMEG00000005395 | 1 retrocopy | |
Bos taurus | ENSBTAG00000026327 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000021388 | 4 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000009300 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000007104 | 4 retrocopies | |
Felis catus | ENSFCAG00000026288 | 1 retrocopy | |
Homo sapiens | ENSG00000161016 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000013379 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000006022 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000024716 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000048523 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000013858 | 1 retrocopy |