RetrogeneDB ID: | retro_etel_1126 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_215587:2659..2968(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LYRM7 | ||
Ensembl ID: | ENSETEG00000010130 | ||
Aliases: | None | ||
Description: | LYR motif containing 7 [Source:HGNC Symbol;Acc:28072] |
Percent Identity: | 87.85 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MGQAAKVLQLFKTLHRTRQQVFK-NDVRALAAAR-KKINEEFKNNKSETSPKKIEELMKIGSDVELLLRK |
.GQAAKVLQLFK.LHRTR.Q.FK.NDVRALAAAR.KKINEEFKNNKSETSP.KIEELMKIG.DVELLLRK | |
Retrocopy | VGQAAKVLQLFKPLHRTR*QLFK<NDVRALAAAR<KKINEEFKNNKSETSPRKIEELMKIGPDVELLLRK |
Parental | SVIQGIHTDH-TLKLVPRAD-LLVENVPYCDSPTQKQ |
SV.QGIHTDH.TLK.VPR.D.LLVENVPYCDSPTQKQ | |
Retrocopy | SVTQGIHTDHNTLKMVPRED<LLVENVPYCDSPTQKQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017776 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000000736 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000006766 | 6 retrocopies | |
Echinops telfairi | ENSETEG00000010130 | 1 retrocopy |
retro_etel_1126 ,
|
Oryctolagus cuniculus | ENSOCUG00000000166 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000015568 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000045961 | 1 retrocopy |