RetrogeneDB ID: | retro_etel_1144 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_218065:283..779(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRPS25 | ||
Ensembl ID: | ENSETEG00000008261 | ||
Aliases: | None | ||
Description: | mitochondrial ribosomal protein S25 [Source:HGNC Symbol;Acc:14511] |
Percent Identity: | 76.51 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MAMKGRFPIRRTLQYLGQGDVVFKDSVKVMTVNYNTH-GELGEGARRFVFFNITQIQYKNPWVQIMXXXX |
MAM.GRFPI.RTLQYLGQGDV.FKDSVKVMT.NYNTH.GELGEGARRFVFFNI.QIQYKNPWVQI..... | |
Retrocopy | MAMEGRFPIHRTLQYLGQGDVLFKDSVKVMTGNYNTH>GELGEGARRFVFFNIPQIQYKNPWVQITMIKN |
Parental | XXXXXXXXXXXXTGEQVLVDMETKSNKEIIAHIRTILGKNEETLKKEEQEKKQLSHPAHFGPRKYCLREC |
.............GEQVLVDMETKSNKE..AHIRTILG.NEETLKKEEQ.KKQLS.PAHFGPRKYCLREC | |
Retrocopy | VTLSPFLRFYLDSGEQVLVDMETKSNKETMAHIRTILGENEETLKKEEQGKKQLSRPAHFGPRKYCLREC |
Parental | ICEVEGQVPCPALVPLPEDLKFSAQG |
ICEV.GQVP.PALVPLP........G | |
Retrocopy | ICEVQGQVPSPALVPLPKEMRWKYKG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000004349 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000028683 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000008261 | 2 retrocopies |
retro_etel_1144 , retro_etel_1227,
|
Felis catus | ENSFCAG00000027687 | 1 retrocopy | |
Latimeria chalumnae | ENSLACG00000009006 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000022178 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000017248 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000006984 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000009370 | 3 retrocopies | |
Pelodiscus sinensis | ENSPSIG00000008882 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000009881 | 1 retrocopy |