RetrogeneDB ID: | retro_fcat_2014 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | X:102288941..102289449(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRPS25 | ||
Ensembl ID: | ENSFCAG00000027687 | ||
Aliases: | None | ||
Description: | mitochondrial ribosomal protein S25 [Source:HGNC Symbol;Acc:14511] |
Percent Identity: | 71.84 % |
Parental protein coverage: | 99.42 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | MPMKGRFPIRRTLQYLGQGDVVFKDSVKVMTVNYNTHGELGEGARKFVFFNIPQIQYKNPWVQIIMFKNM |
MP.KG.F.I..TLQYL.......K.SVKVMTVNY.THGELGE.ARKFVFFNI.QIQYKNP.VQI..FKNM | |
Retrocopy | MPRKGCFLIHCTLQYLSRVA*CSK-SVKVMTVNYKTHGELGEEARKFVFFNISQIQYKNP*VQIMVFKNM |
Parental | TPSPFLRFYLDSGEQVLVDVETKSNKEIMEHVK-KILGKSKETLEREEQ-EKKQLSHPAHFGPRKYCLRE |
..SPFL.FYLDSG.QVL.DV.TK.NK.IMEH.K.KILGK..ETL..EEQ.EK.QLSHP.HFGP.KYCL.. | |
Retrocopy | RLSPFLQFYLDSG*QVLADVKTKGNKDIMEHIK<KILGKNQETLDKEEQ<EK-QLSHPTHFGP*KYCLGA |
Parental | CICEVEGQVPCPGLVPLPKEMTGKYRAMLKASAQ |
.ICEVEGQVP...LVPL.KEMT.KY...LKA.AQ | |
Retrocopy | YICEVEGQVPFLDLVPLHKEMTEKYKTTLKARAQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 11 .36 RPM |
SRP017611_kidney | 0 .00 RPM | 25 .66 RPM |
SRP017611_liver | 0 .00 RPM | 6 .87 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000004349 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000028683 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000008261 | 2 retrocopies | |
Felis catus | ENSFCAG00000027687 | 1 retrocopy |
retro_fcat_2014 ,
|
Latimeria chalumnae | ENSLACG00000009006 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000022178 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000017248 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000006984 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000009370 | 3 retrocopies | |
Pelodiscus sinensis | ENSPSIG00000008882 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000009881 | 1 retrocopy |