RetrogeneDB ID: | retro_ttru_140 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | GeneScaffold_1355:13018..13515(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRPS25 | ||
Ensembl ID: | ENSTTRG00000009881 | ||
Aliases: | None | ||
Description: | mitochondrial ribosomal protein S25 [Source:HGNC Symbol;Acc:14511] |
Percent Identity: | 79.41 % |
Parental protein coverage: | 97.69 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | GRFPILRTLQYLGQGDIVFKES-VKVMTVNYNTHGELGEGARKFVFFNIPQIQYKNPWVQIMMFKNMTPT |
GRFPI..T.QYL.QGD.VFK.S.VKVMTVNYNTHGELGEG.R.FV.FNIP.IQYK.PWVQIMMFK.MT.T | |
Retrocopy | GRFPIRCTPQYLRQGDVVFKDS<VKVMTVNYNTHGELGEGTREFVVFNIPPIQYKDPWVQIMMFKHMTLT |
Parental | PFLRFYLDSGEQVLVDVETKSNKEIMEHIKKILGKNEETLEREEQEKKQLSHPAHFGPRKYCLRECICEV |
PFLRFY.DSGEQVLV.VETKSNK.I.EHIKKILGKNEETL..EEQEK.QLSHPAH.GP.K....ECICE. | |
Retrocopy | PFLRFYWDSGEQVLVGVETKSNKQIVEHIKKILGKNEETLRKEEQEKSQLSHPAHSGP*KW---ECICEM |
Parental | EGQVPCPGLVPLPREMTGKYKAALKASAQD |
.GQV.CPG.VPLP.EMTGKYK..LKASA.D | |
Retrocopy | KGQVSCPGPVPLPKEMTGKYKLSLKASARD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000004349 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000028683 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000008261 | 2 retrocopies | |
Felis catus | ENSFCAG00000027687 | 1 retrocopy | |
Latimeria chalumnae | ENSLACG00000009006 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000022178 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000017248 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000006984 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000009370 | 3 retrocopies | |
Pelodiscus sinensis | ENSPSIG00000008882 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000009881 | 1 retrocopy |
retro_ttru_140 ,
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