RetrogeneDB ID: | retro_etel_126 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | GeneScaffold_2382:10571..11382(+) | ||
Located in intron of: | ENSETEG00000015720 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSETEG00000000341 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 78.78 % |
Parental protein coverage: | 69.54 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | MAGNEAGVTLGQLHLSRQDLTTLDVTKLTPLSHEVISRQATINIGTIGHVAHGK-STVVKAISGVHTVRF |
MA...AGVTLGQ.HLSRQDLTT.DVT...P.SHEV.SRQAT.N.G.....AHG..STVVKA.S.VHT.R. | |
Retrocopy | MAESQAGVTLGQPHLSRQDLTTVDVTTWAPHSHEVPSRQATVNTGANARGAHGR>STVVKATSRVHTGRL |
Parental | K-NELERNITIKLGYANAKIYKLDDPSRPRPECYRSCGSSTPDEFPTDIPGTKGNFKLVRHVSFVDCPGH |
K.NELERN.TIKLGYA..KIY..DDPS.P.PE.YRSCGSS.PDEFPTD.PGTKGNFKL.R.VSF.DCP.H | |
Retrocopy | K<NELERNSTIKLGYA--KIYERDDPSCPWPESYRSCGSSPPDEFPTDVPGTKGNFKLLRQVSFLDCPDH |
Parental | DILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIMKLKHILILQNKIDLVKESQAKEQYEQIL |
DILMATMLNGA.VMD.ALLLIAG.ES.PQ.QTSEHLAA.EIMK.KHILILQN...LVKESQAKEQYEQIL | |
Retrocopy | DILMATMLNGATVMDEALLLIAGKESRPQAQTSEHLAATEIMKPKHILILQNEVHLVKESQAKEQYEQIL |
Parental | AFVQGTVAEGAPIIPISAQLKYNIEV-VCEYIVKKIPVPPRDFTSEPR-LIVIRSFDVNKPGCEVDDL |
A.VQGTVA.GAPIIPISAQLKY.IEV.VCE.I.KKIPVPPRDF.SEP..LIVI.SFDVNKP.CEVDDL | |
Retrocopy | ALVQGTVA-GAPIIPISAQLKYSIEV<VCEDIIKKIPVPPRDFASEPH<LIVICSFDVNKPDCEVDDL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000014337 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000018584 | 1 retrocopy | |
Equus caballus | ENSECAG00000017343 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000000341 | 4 retrocopies | |
Loxodonta africana | ENSLAFG00000011052 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000006979 | 4 retrocopies | |
Monodelphis domestica | ENSMODG00000007541 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000020194 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000002533 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000012178 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000012474 | 4 retrocopies |