RetrogeneDB ID: | retro_etel_2017 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_325301:47653..48530(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000006784 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSETEG00000000341 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 86.44 % |
Parental protein coverage: | 74.37 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | YRSCGSSTPDEFPTDIPGTKGNFKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTS |
YRS.GSS.PDEFPTD.PGTKGNFKLVRHVSFVDCPGH.IL.ATMLNGA.VMDAALL.IAGNESCPQPQ.S | |
Retrocopy | YRSGGSSAPDEFPTDVPGTKGNFKLVRHVSFVDCPGHEILVATMLNGATVMDAALLRIAGNESCPQPQMS |
Parental | EHLAAIEIMKLKHILILQNKIDLVKESQAKEQYEQILAFVQGTVAEGAPIIPISAQLKYNIEVVCEYIVK |
EHLAAIEIMKLKHILILQ.KI.LVKE.QA.E.YE.ILAFVQG..AEG.PI.PIS.QLKYNIEVVCEYIVK | |
Retrocopy | EHLAAIEIMKLKHILILQYKIHLVKERQAEEHYEHILAFVQGIGAEGVPISPISVQLKYNIEVVCEYIVK |
Parental | K-IPVPPRDFTSEPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILKGVLKVGQEIEVRPGIVSKDSEGKLM |
K.IP.P.RDFTSEPRLIVIRSFDVNKPGCEVDDLKG.VAGGS.LK.VLKVGQEIEVRPGI.SKDSEGK.M | |
Retrocopy | K<IPLPSRDFTSEPRLIVIRSFDVNKPGCEVDDLKGAVAGGSLLKEVLKVGQEIEVRPGIASKDSEGKFM |
Parental | CKPIFSKIVSLFAEHNDLQYAAPGGLIGVGTKIDPTLCRADRMVGQVLGAVGALPEIFTELEISYFLLRR |
CKPIFS.IVSLF.EHNDLQY..P.GLIGVGTKIDPTLC..DRMVGQVLGA.G.LPEIFTELE.SYFLLRR | |
Retrocopy | CKPIFSIIVSLFVEHNDLQYVVPEGLIGVGTKIDPTLCQVDRMVGQVLGAEGVLPEIFTELEMSYFLLRR |
Parental | LLGVRTE-GDKKAAK |
LLGV.TE..DKKAAK | |
Retrocopy | LLGVHTE<RDKKAAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000014337 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000018584 | 1 retrocopy | |
Equus caballus | ENSECAG00000017343 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000000341 | 4 retrocopies | |
Loxodonta africana | ENSLAFG00000011052 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000006979 | 4 retrocopies | |
Monodelphis domestica | ENSMODG00000007541 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000020194 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000002533 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000012178 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000012474 | 4 retrocopies |