RetrogeneDB ID: | retro_etel_1376 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_256318:785..1148(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF3J | ||
Ensembl ID: | ENSETEG00000005052 | ||
Aliases: | None | ||
Description: | eukaryotic translation initiation factor 3, subunit J [Source:HGNC Symbol;Acc:3270] |
Percent Identity: | 85.12 % |
Parental protein coverage: | 57.89 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | VNNTVFGIDAMNPSSRDDFTEFGKLLKDKITQYEKSLYYASFLEALVRDVCISLEIDDLKKITNSLTVLC |
VNNTVFGIDAMNPSSRDDFTEFGKLLKDKITQYEKSLYYASFLEALVRDVCISLEIDD.KKITNSLTVLC | |
Retrocopy | VNNTVFGIDAMNPSSRDDFTEFGKLLKDKITQYEKSLYYASFLEALVRDVCISLEIDDWKKITNSLTVLC |
Parental | SEKQKQEKQSKAKKKKKGVVPGGGLKATMKDDLADYGGYDGGYIQDFEDFM |
S.................VVPGGGLKATMKDDLADYGGYDGGYIQDFEDFM | |
Retrocopy | SXXXXXXXXXXXXXXXXXVVPGGGLKATMKDDLADYGGYDGGYIQDFEDFM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000002412 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000005052 | 1 retrocopy |
retro_etel_1376 ,
|
Gorilla gorilla | ENSGGOG00000000548 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000010372 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017696 | 1 retrocopy | |
Mus musculus | ENSMUSG00000027236 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000005568 | 1 retrocopy |