RetrogeneDB ID:

retro_ggor_41

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:9:69744333..69744708(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSGGOG00000025529
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:EIF3J
Ensembl ID:ENSGGOG00000000548
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_41
GCAAAGGCAACTTTTGGTGTTAAGACTACTGTATATGGATCGGATGCTGTAAACCCATCTTCAAGGGATGACCTTACAGA
GTTTGGAAAGTTACTAAAAGATAAAATTACGCAAAATAAAAAGTCACTATATTATGCCAGTTTTTTGGAAGTCTTAGTTG
GAGATGTGTGTATGTCATTGGAAACTGATGACTTGAAAAAGGTTCTCAATGCATTGTGCTTTGAAGTGAAAAACAGAAGC
AAGCAAAGCCAAGCCAAAAAGAAGAACAAAGGTATGGTTCCTGGAGGGAGATTAAAAGCCACCATGACAAATGATCTGGT
AAATTATGGTGGTGATGATGCAGGGTATGCACAAGACTATGAAAATGTCATGTGA

ORF - retro_ggor_41 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 71.65 %
Parental protein coverage: 56.7 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalAKETFGVNNTVYGIDAMNPSSRDDFTEFGKLLKDKITQYEKSLYYASFLEVLVRDVCISLEIDDLKKITN
AK.TFGV..TVYG.DA.NPSSRDD.TEFGKLLKDKITQ..KSLYYASFLEVLV.DVC.SLE.DDLKK..N
RetrocopyAKATFGVKTTVYGSDAVNPSSRDDLTEFGKLLKDKITQNKKSLYYASFLEVLVGDVCMSLETDDLKKVLN
ParentalSLTVLCSEKQKQEKQSKAKKKKKGVVPGGGLKATMKDDLADYGGYDGGYVQDYEDFM
.L...C.E.....KQS.AKKK.KG.VPGG.LKATM..DL..YGG.D.GY.QDYE..M
RetrocopyAL---CFEVKNRSKQSQAKKKNKGMVPGGRLKATMTNDLVNYGGDDAGYAQDYENVM

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .00 RPM 17 .65 RPM
SRP007412_cerebellum 0 .00 RPM 12 .37 RPM
SRP007412_heart 0 .00 RPM 5 .38 RPM
SRP007412_kidney 0 .00 RPM 19 .22 RPM
SRP007412_liver 0 .00 RPM 11 .05 RPM
SRP007412_testis 0 .00 RPM 41 .34 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_41 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_41 has 2 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Homo sapiens retro_hsap_4189
Pongo abelii retro_pabe_3429

Parental genes homology:
Parental genes homology involve 13 parental genes, and 16 retrocopies.

Species Parental gene accession Retrocopies number
Callithrix jacchus ENSCJAG000000024121 retrocopy
Cavia porcellus ENSCPOG000000123963 retrocopies
Equus caballus ENSECAG000000087161 retrocopy
Echinops telfairi ENSETEG000000050521 retrocopy
Homo sapiens ENSG000001041311 retrocopy
Gorilla gorilla ENSGGOG00000000548 2 retrocopies
retro_ggor_1687, retro_ggor_41 ,
Macropus eugenii ENSMEUG000000103721 retrocopy
Microcebus murinus ENSMICG000000050061 retrocopy
Monodelphis domestica ENSMODG000000176961 retrocopy
Mus musculus ENSMUSG000000272361 retrocopy
Nomascus leucogenys ENSNLEG000000055681 retrocopy
Oryctolagus cuniculus ENSOCUG000000053761 retrocopy
Otolemur garnettii ENSOGAG000000046941 retrocopy



Copyright © RetrogeneDB 2014-2017